Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1839 ATGTCCTTGTGCTTCGACAGTTCTCTTCTACCCCAGATGTTGTTTGTGAATGCTTTCTTTTCCCTATATTATCTTTGCTGTAAACCAATCTTTCAAAGATATCCACGGCCAGAGAAAGAATACCAGTCATTTTCTCTTATCTACAGTGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATATCACGTTGCCATCACCGGAAGTGGAGAACAGAGTTGAGAAGTGATGGTTTTCCATCTGGGGCTAATAGTCCCAGAACATACACTAGAAGAAGTTCCCCATTAAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGTATCGGACAGTGGGGATCACCTTCGCCTTCATAGTCCCTTTGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCTTTATCTGATGTGATATTGTATTCTGTTCCTCCAAGGGGTTTCTTCCATCCAGATTCTACTAGTGGTTCAGTCCTCTCAGTGTCATCAGGAGGATCAGCCATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGACACCTTAGGGGATGTTTTCATTTGGGGCGAAGGAACTGGTGATGGTGTTTTGGGTGGTGGGACTCACCATTTTGGTGGAAAAATGGATTCTCTACTGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTACAGAACATAGCTTGTGGTGGACGACATGCTGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATATGGAGGCAGGCTCGGGCATGGTGTTGACTCTGATGTTCTTCATCCAAAGTTTATAGAATCTCTGAGTAATACCAATATTGAACTTGTAACTTGTGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGGTCTTCTGGGGCATGGAAATCCAGTGAGCCAATGGGTCCCCAAAAAAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCGCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTGCCGGGCAATTATTTACTTTTGGTGATGGTACATTTGGCGTTCTGGGTCATGGGGACAGAAAAAGTGTTAGAATTCCGAGAGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGAACTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTAGAAGTCATGGTCGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGACGGTGACAAAGGTCGACTTGGGCATGGTGGCAAGGAAGCAAAACTTGTTCCTACCTGTGTCGCAGCTCTTGTTGAACCTAATTTTTGTCAAGTTGTGTGTGGACAGAGTCTTACTGTTGCACTTACTACCTCAGGCCATGTCTATACCATGGGTAGTCCTGTCTATGGCCAACTCGGAAATCTTCATACTGACGGCAAATTACCAAAACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTCTTAACTTCAAGGACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATATAGAGGATAGAAATATTCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTCTGCCTTTTAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGCAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGGGTCTGTGATAATTGTTATAATAAACTAAGGAAAAGTATTGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAATATCAATCAGCTGCCGTTTGAGTTTAATGATAATGATGATAAATTTGATTCAAGATCTCGCAATCAGCTTGGTAGGTTTTCTTCAATGCAATCTTTGAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAATTCAATAGTAGTCGCGTCTCGCCCATTCCAAATGGAGGTTCCCAGTGGGGGCCATCGAATATTTCTAAATCTGTCAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATCTCTAGACATCATAGTCCACCTCGTTCAACGACTCCAACGCCAACACTTGGAGGACTTACCTCCCCTAAGATAGGTGTGGATGATGTTAAGAGGACAAACGATAGCTTTAACCAAGAGATTATTAAATTAAGAGCGCAGGTGGAAAATATGACTCGAAAAAATCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTTAAGGAAGCAATTTCATATGCTAGTGAAGAAACTTCCAAATGCAAAGCAGCAAAGGAAGCGATCAAGTCGCTTACTAAGCAGCACATGGAAATGGATAGAGAACATCTGTCCAAGAAACTAGCCCGGACACTGAAGGACATGGCTGAGAAGCTTCCTGCAGGAGAATCTAGGAATGTGAAATTTCCATCTGTTGCTTCCTTTGAATCAAATCCTTCTTCTAATGAACTAATCAATTCTTCTATTGATGGATTAAGTATTCAAGCTGCTAGCCCAGAACCAGACTTAACCGTACTGAACAACCAGTCACTCTCAAACGGATTAAATACCAATGGTAATCGAAGTGCAGGTCACAACAGCAAACAGAGCCAGTTAGATCCGACGATTAGAAATGGGAGCAGAACAAAGGAAGGTGAGACTCGTGGCGAGGTCGGATGGGTTGAGCAAGATGAGCCTGGAGTATATATTACATTTACTTCCCTTGCAGGTGTCATAGATCTTAAGAGAGTTCGTTTCAGTCGAAGGCGGTTTAGTGAGAAGCAAGCCGAACAATGGTGGACAGAGAATCGGGCGAGAGTATACGAGAAGTACAATGTACGCGTGACTGACAAGTCAGCCATTGATGAAACAATCTGTAAATGA 3168 0.4306 MSLCFDSSLLPQMLFVNAFFSLYYLCCKPIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKDEAEVWFSGLKALISRCHHRKWRTELRSDGFPSGANSPRTYTRRSSPLNSPFGSNESLQKVSDSGDHLRLHSPFESPPKNGLDKALSDVILYSVPPRGFFHPDSTSGSVLSVSSGGSAMDAFRVSLSSAVSSSSQGSGHDDGDTLGDVFIWGEGTGDGVLGGGTHHFGGKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEEYGGRLGHGVDSDVLHPKFIESLSNTNIELVTCGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNPVSQWVPKKVNGPLEGIHVSSIACGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVRIPREVESLKGLRTVRTACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGGKEAKLVPTCVAALVEPNFCQVVCGQSLTVALTTSGHVYTMGSPVYGQLGNLHTDGKLPKRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDIEDRNIPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKSIETDSSSHSSVSRRGNINQLPFEFNDNDDKFDSRSRNQLGRFSSMQSLKQVESRSSKKNKKLEFNSSRVSPIPNGGSQWGPSNISKSVNPVFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPKIGVDDVKRTNDSFNQEIIKLRAQVENMTRKNQLQEVELERATKQLKEAISYASEETSKCKAAKEAIKSLTKQHMEMDREHLSKKLARTLKDMAEKLPAGESRNVKFPSVASFESNPSSNELINSSIDGLSIQAASPEPDLTVLNNQSLSNGLNTNGNRSAGHNSKQSQLDPTIRNGSRTKEGETRGEVGWVEQDEPGVYITFTSLAGVIDLKRVRFSRRRFSEKQAEQWWTENRARVYEKYNVRVTDKSAIDETICK 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1839 1055 Coils Coil 850 877 - -
Lele04g1839 1055 FunFam Putative E3 ubiquitin-protein ligase HERC1 597 665 - -
Lele04g1839 1055 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 250 260 IPR000408 -
Lele04g1839 1055 FunFam PH, RCC1 and FYVE domains-containing protein 1 177 424 - -
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 315 IPR000408 -
Lele04g1839 1055 SMART fyve_4 589 658 IPR000306 GO:0046872
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 487 538 IPR000408 -
Lele04g1839 1055 SUPERFAMILY FYVE/PHD zinc finger 592 661 IPR011011 -
Lele04g1839 1055 Gene3D - 26 82 IPR011993 -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 771 804 - -
Lele04g1839 1055 SUPERFAMILY PH domain-like 22 74 - -
Lele04g1839 1055 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 664 IPR013083 -
Lele04g1839 1055 FunFam PH, RCC1 and FYVE domains-containing protein 1 425 596 - -
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 539 590 IPR000408 -
Lele04g1839 1055 Pfam Transcription factor BRX N-terminal domain 852 870 IPR027988 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 247 260 IPR000408 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 373 387 IPR000408 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 316 332 IPR000408 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 476 494 IPR000408 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 266 282 IPR000408 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 534 555 IPR000408 -
Lele04g1839 1055 PRINTS Chromosome condensation regulator RCC1 signature 357 373 IPR000408 -
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 771 793 - -
Lele04g1839 1055 Gene3D - 184 432 IPR009091 -
Lele04g1839 1055 Gene3D - 433 601 IPR009091 -
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 370 IPR000408 -
Lele04g1839 1055 SUPERFAMILY RCC1/BLIP-II 206 592 IPR009091 -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 90 121 - -
Lele04g1839 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 540 587 IPR000408 -
Lele04g1839 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 371 419 IPR000408 -
Lele04g1839 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 264 312 IPR000408 -
Lele04g1839 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 315 367 IPR000408 -
Lele04g1839 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 486 535 IPR000408 -
Lele04g1839 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 434 483 IPR000408 -
Lele04g1839 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 263 IPR000408 -
Lele04g1839 1055 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 357 367 IPR000408 -
Lele04g1839 1055 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 39 875 - -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 678 742 - -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 939 984 - -
Lele04g1839 1055 Pfam Unstructured region between BRX_N and BRX domain 909 979 - -
Lele04g1839 1055 ProSiteProfiles PH domain profile. 1 75 IPR001849 -
Lele04g1839 1055 Coils Coil 801 842 - -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 724 742 - -
Lele04g1839 1055 Pfam Transcription factor regulating root and shoot growth via Pin3 987 1039 IPR013591 -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 696 711 - -
Lele04g1839 1055 Pfam FYVE zinc finger 591 657 IPR000306 GO:0046872
Lele04g1839 1055 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 595 657 IPR017455 -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 939 973 - -
Lele04g1839 1055 MobiDBLite consensus disorder prediction 89 139 - -
Lele04g1839 1055 ProSiteProfiles BRX domain profile. 986 1040 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1839 Lele-ChrLele04 22789944 22796760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1839 984 1049 Major Intrinsic Protein MIP AT1G31880 49.254 1.62e-12 68.6