Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1809 ATGGATCTTTGGTTGCCACGTGGGGTTTTCCTCTTCCGCTCCTTATGTTGTGGATTGCCCGTTTGCTTAGCCATGAATTTTCCTGGTTGGAATTTTGAGTACGATTCTTGTGTCACCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAACTTGGGGAGCTGATATGGCAAAATGGACAAGTAGTTCTGCACAGCCAAACGCAAAAAAAACCAGCCCCAAATTCCATCGACTCGAGACAGTTCCAGAAAAATGATCAATCAACAATCAGGGCTAATGAGTCTTGTGGGAACTCAAGTCATTTGATTCAAGAAGATGATGCAGTCTCATGGATTCAATATCCACTTGAGGATCCATTGGAACAACAACTATGTTCAAACATTTTATCTGAACTGCCATCCTCTGGACTTGAGTCTGACAAGCCGATAAGGCAACTCGAAGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCCTGCCATATGCCTGCAAGTGCACAAACACAAAATATAAAGCCCTTTCATCAGGAATTCTCAGGAAATCGTATGCCTGCTCCAAGAGTTCATTTTCCTGATTCAACCCAGAAAAATATTAATTTTGGTGGATCACAAAATGTCCTCAATTTTTCTCAGTTTTCAGAACCCTCCAAAGTAGCCTCAACATCTTCTAATGCACAGTCTGGAGATAAAGGTAATGGTAATCTGTTGCAAAACAAGGGCAAAGAGTGCTCGGTCGTGACAGTTGGTTCAAGTCACTGTGGCAGCAACCAAGTCCCTCTAGATCCTGACATAAGCAGGGCATCAAGCAATGGAGTTTGGACTACTGCTTTCTATTCTGAGCCTGAACCCCAGAGGGATGGTGTCAAGAAATCAATTCCTCAGAGTGAGAAAGGGAAGTCAGAGGTGGTTGAACCAACTTTGAGTTCATCATCAGATGACTCGGGTAGTCTTGCAAAAACTTGCTCCTGGTCTGCAAGAAGCCATGGCCAAAAAAGGAAAAAGATAGATACAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCAGCTGTTGAAAACAAGGCATCTCAGGGGACAAGGCCTTCCCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACGTTGCAACAACTCATACCTCACAGTAATAAGACAGATAAAGCATCAATGTTAGATGAGGCAATTGAGTACTTGAAGTCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTTCCCGGAATTCAGCACTATATGTCCCAAATCGGTATGGGAATGGCTTCGCCCTCGTTTCCTCCTATTCCCAATCCGGTGCAATTACCAAGAACATCACTTGATCATTCCATGTCCATGGCTCAGACACCAAACCAGGGTTTGACGCCTCAAGCTCCTGTTATGGGTCCCTTTACTTATCAAAATCAGATGCAAAATCAAGCTCTCTCAGAGCAATATGCACGTTATATGGGGTATCAATTTATGCAAAATGCCTCTCAGCCAATGAACGGATTTAATTATGGATCTCAAGTACAACATAGTCAAACCATGATTCCACCCAATAGTAGCAGTGGACCCTTGAATGGAGCCGCAAATAATGATGATAATTTAAGTGGCAAGATGGCTTAA 1689 0.4375 MDLWLPRGVFLFRSLCCGLPVCLAMNFPGWNFEYDSCVTNQKKPMGPDQELGELIWQNGQVVLHSQTQKKPAPNSIDSRQFQKNDQSTIRANESCGNSSHLIQEDDAVSWIQYPLEDPLEQQLCSNILSELPSSGLESDKPIRQLEEGKYVKFGPYSACHMPASAQTQNIKPFHQEFSGNRMPAPRVHFPDSTQKNINFGGSQNVLNFSQFSEPSKVASTSSNAQSGDKGNGNLLQNKGKECSVVTVGSSHCGSNQVPLDPDISRASSNGVWTTAFYSEPEPQRDGVKKSIPQSEKGKSEVVEPTLSSSSDDSGSLAKTCSWSARSHGQKRKKIDTEELEEQSEATEPKSAVENKASQGTRPSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSQIGMGMASPSFPPIPNPVQLPRTSLDHSMSMAQTPNQGLTPQAPVMGPFTYQNQMQNQALSEQYARYMGYQFMQNASQPMNGFNYGSQVQHSQTMIPPNSSSGPLNGAANNDDNLSGKMA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1809 562 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 431 IPR036638 GO:0046983
Lele04g1809 562 MobiDBLite consensus disorder prediction 528 555 - -
Lele04g1809 562 MobiDBLite consensus disorder prediction 282 296 - -
Lele04g1809 562 SMART finulus 373 422 IPR011598 GO:0046983
Lele04g1809 562 MobiDBLite consensus disorder prediction 528 562 - -
Lele04g1809 562 MobiDBLite consensus disorder prediction 328 348 - -
Lele04g1809 562 MobiDBLite consensus disorder prediction 276 382 - -
Lele04g1809 562 CDD bHLH_AtPIF_like 367 430 - -
Lele04g1809 562 MobiDBLite consensus disorder prediction 212 236 - -
Lele04g1809 562 PANTHER TRANSCRIPTION FACTOR PIF3 40 536 IPR044273 GO:0003700|GO:0006355
Lele04g1809 562 MobiDBLite consensus disorder prediction 349 364 - -
Lele04g1809 562 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 416 IPR011598 GO:0046983
Lele04g1809 562 MobiDBLite consensus disorder prediction 300 324 - -
Lele04g1809 562 Pfam Helix-loop-helix DNA-binding domain 371 417 IPR011598 GO:0046983
Lele04g1809 562 Gene3D - 363 423 IPR036638 GO:0046983
Lele04g1809 562 MobiDBLite consensus disorder prediction 365 382 - -
Lele04g1809 562 FunFam Basic helix-loop-helix transcription factor 362 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1809 Lele-ChrLele04 22463847 22467961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1809 243 511 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 41.638 2.80e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele04g1809 HLH 1.8e-14 No_clan