Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1799 ATGCTTAATTTTCTGATTGCAAGATTATCTATGTCACACCCGTGCCAGAGGAGTAGCCATCTGGGTTTTCTCCGTCGCAATGCTTCTCACATTTTCAATTCTTTTTCTTCGGCTGTGAAATTATCTGAATCTGCTAAACCAAAGAACAAGCAAAAGCAAGAAGGACATGAATCGTTTACTGTTTCTTATCTGATGAACTCATGTGGCTTGTCCCCAAAACTAGCTGTTGAAGTATCCAAAAAGATTAATTTGAAAGACCCAGATAATCCCACCCTGATACTTAATCTATTTAAGAGCTATGGATTCTCGAATTCTCAGATATCCAAGATTGTGATAAAGTATCCATCTGTGCTTTTGACAAACCATGAGAATAACCTTTTGCCCAAGCTAAAGTTTCTCGAGTCTATAGGGTTCTCAAGGTCTGAACTCCCAGAACTCCTCATTTATAACATTCGACTGCTAACCTGGAGCTTACAGAACCGAATAATCCCCGGTTATGAGGGCCTAAAGAGTGTGACTGATGACGATCATGAAATGCATACAATAATTAGCAAACGCAGTGGATGGAATTTTCTGCATTATGATGTGAAAAATTTGGTCCCAAACATAAAGCTTCTGAGAGAGCTTGGAGTACCTAACTCTTGTCTCAACCTGCTGCTAAATAGGTTTACCAGTGTAGCATCTGTAGATCATGCAAAGTTTGTCGAACATGTGAAGTTTGCTAAAGAAATAGGAGTTAAACCCTTTAGCGCTACGTTCATCCGCTCTATTCATGCGTTATCAATGAGAAGGAAATCGACTTGGGAGTCAAAGCTGGACATCTATCAGAGGTGTGGCTGGTCCAGGGATATGACTCTTTCAGTATTCAAGAAGTTTCCATATTGTATGTTGATATCAGAGGAGAAAATCACAAGCACGATTAAGTTTCTTGGTGATGAACTGGGTTTGTCATCAAAAGATATAGTTAGATTTCCAACATATCTTGGTTATAGCTTGAAGCAGAGGATTATTCCTAGATCCGCAGTTTTTAAAGTTTTGAGAATGAAGGGTTTGATCGATAATGATATGCCCTTTTTTGCCTTGGTCAAATTAAGTGAGGAAATGTTCCTGGACAAATTTGTTTTCAGATTTCAAGAAAGTGTTCCTGAGCTGTTGAACATTTATCAAGATCAGATAACACGTTCACCTAAAGTTCTGCAGTCTTCAAGGTTCTTTGAAGTTTATGCATGTAGATTTAAGCCTGTGCTGACTTATGGAAGGGCAGTATTGAAAGGGCAAGTGATAGAAATGGAGCCTAAGAGATTAAAATCAGCAGTCATGAAAACTAAATGGGAGCTCCTCCTTTCAATCACATATAAGAGGTCGAGATCAGAGATGCTTCAGTGCATATTTCTTCTGTCCGATTCCGGAGAGGTCATGCTAGAGAAACAACTTACTGGGCACCGCGTAGATCGATCTATATGTACCTGGTTCTGGGAGCAGGCCGTTTCACAAGGTGATTCCTTCAAGCAACTACCAGTGATTGCATCCCCTACGCATTATCTTTTCCAAGTTTTTCGGGAGGGAATTACTTTTTTGGCGTGCACCCAAGTTGAAATGCCACCACTAATGGGAATTGAGTTCCTTTGTAGGGTAGCTGATGTCCTCAATGATTATCTCGGAGGGTTGAATGAAGACTCGATAAAAGACAACTTCATTATCGTGTATGAGCTGCTAGATGAGATGATAGACAATGGCTTCCCGCTAACTACTGAACCTAATATCCTTCAAGAAATGATAGCTCCCCCAAATATTGTTAGTAAGATGTTGAGCGTTGTGACTGGCAGCAGTTCAAATGTGAGTGACACCCTTCCAGGTGCAACGGCATCTTGTGTTCCCTGGAGAACAGCCGATGCGAAGTATGCAAATAATGAAGTTTACGTAGATCTTGTTGAGGAAATGGATGCTATAATAAGCAGGGATGGTGTTCTGGTGAAATGTGAGATCAATGGCGAAGTTCAAGTAAATTCCCACATCACTGGTATTCCTGACTTGACTCTTTCATTTGCAAATCCTTCTATTCTAGATGATGTGAGGTTCCATCGTTGTGTTCGATTTCGGCCTTGGGAATCTCATCAAGTTCTCTCATTTGTGCCTCCTGATGGACAGTTTAAGCTAATGAGTTACAGGGTCAGAAAATTGAAGAGCACCCCAATATATGTGAAGCCACAGTTATCATCAGACGGGGGAACATGTCGTGTTAATGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCAGTTACTGTTCAGTTTACTCTTCCCCCTTGTATCTTATCAGCTGATCTCACATCAAATCACGGAACAGTAAACATCCTTTCTGACAAGACATGCACTTGGTCCATTGGACGGATCCCAAAAGATAAAGCCCCATCAATGTCCGGAACACTTGTGCTTGAGAATGGATTGGAGCGCCTTGTTGTTTTCCCAACATTTCGCGTTGGTTTTAGGATTATGGGCGTTGCCCTCTCTGGTTTACAAATAGATAAACTCGATCTCAAGAGCGTACCGTACCGTTTCTATAAAGGCTTCCGAGCTCTAACGCGCGCAGGTGAATTTGAAGTCAGGAGTTACGGATTCTCTGATTCGCATATCTCCAAAATTGTGGAAGAGTATCCACGAGTTCTTTTGTCGAAACCTGAGGTGACGCTTTCGCCGAAGCTGAGATTTTTCCGGTCCATAGGGTTTACATGTCTTGAACTGCCAGAACTCATCGTATGTAACAGTAAATTCTTAACTTCGAGCTTGAAGAAAACTATAATTCCCCGTTATGAGGCCCTTAAGAGAGTACTAGGTGACGATGAGAAAGCAAATGTAGCTTTCAAACGCTGGGGTAGATACCATAAGGATGTAGAGAATTTACTTTCAAACATAAAGGTTTTGAGAGAATACGGAGTGCCTAAATCTTCTGTCTCCCAGTTGCTTACTAATTTTCTGAGGGCTGCGCTTATAATGCCAGCAAAGTTTGTTGAACTTGTCAAGTTCGCTAAGGAGATAGGGATCGATCCAACTAAGGCTGAAGTTTCCAACATGCATGCTGTTATCAGAGAGGAAAATATCACAACCACAATGAAGTTTCTTGTGGATGAAATGGGTTTGCCTTTGGTAGATATAGTTAATTTCCCAACAGTTCTTGGCTATCGCTTGAAGGAAAGGATTATTCCTAGATCCTCAGTTTTTAAGATTTTGAAAACCAATGGTTTGATAAAATGTGATAAGTCCTTCAGATCCATTGTCATCTTAAGTGAGCAAAAGTTTTTGGAAAAGTTTGTAATCAGATTTCAGGAAAGTGTTCCTGAGCTGTTGGATATTTATGAAAGACGTTCCTGA 3378 0.4065 MLNFLIARLSMSHPCQRSSHLGFLRRNASHIFNSFSSAVKLSESAKPKNKQKQEGHESFTVSYLMNSCGLSPKLAVEVSKKINLKDPDNPTLILNLFKSYGFSNSQISKIVIKYPSVLLTNHENNLLPKLKFLESIGFSRSELPELLIYNIRLLTWSLQNRIIPGYEGLKSVTDDDHEMHTIISKRSGWNFLHYDVKNLVPNIKLLRELGVPNSCLNLLLNRFTSVASVDHAKFVEHVKFAKEIGVKPFSATFIRSIHALSMRRKSTWESKLDIYQRCGWSRDMTLSVFKKFPYCMLISEEKITSTIKFLGDELGLSSKDIVRFPTYLGYSLKQRIIPRSAVFKVLRMKGLIDNDMPFFALVKLSEEMFLDKFVFRFQESVPELLNIYQDQITRSPKVLQSSRFFEVYACRFKPVLTYGRAVLKGQVIEMEPKRLKSAVMKTKWELLLSITYKRSRSEMLQCIFLLSDSGEVMLEKQLTGHRVDRSICTWFWEQAVSQGDSFKQLPVIASPTHYLFQVFREGITFLACTQVEMPPLMGIEFLCRVADVLNDYLGGLNEDSIKDNFIIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKMLSVVTGSSSNVSDTLPGATASCVPWRTADAKYANNEVYVDLVEEMDAIISRDGVLVKCEINGEVQVNSHITGIPDLTLSFANPSILDDVRFHRCVRFRPWESHQVLSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLSSDGGTCRVNVLVGIRNDPGKTIDSVTVQFTLPPCILSADLTSNHGTVNILSDKTCTWSIGRIPKDKAPSMSGTLVLENGLERLVVFPTFRVGFRIMGVALSGLQIDKLDLKSVPYRFYKGFRALTRAGEFEVRSYGFSDSHISKIVEEYPRVLLSKPEVTLSPKLRFFRSIGFTCLELPELIVCNSKFLTSSLKKTIIPRYEALKRVLGDDEKANVAFKRWGRYHKDVENLLSNIKVLREYGVPKSSVSQLLTNFLRAALIMPAKFVELVKFAKEIGIDPTKAEVSNMHAVIREENITTTMKFLVDEMGLPLVDIVNFPTVLGYRLKERIIPRSSVFKILKTNGLIKCDKSFRSIVILSEQKFLEKFVIRFQESVPELLDIYERRS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1799 1125 FunFam Mitochondrial transcription termination factor-like 158 381 - -
Lele04g1799 1125 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 625 872 IPR036168 -
Lele04g1799 1125 CDD AP-3_Mu3_Cterm 625 872 - -
Lele04g1799 1125 ProSiteProfiles Mu homology domain (MHD) profile. 636 872 IPR028565 -
Lele04g1799 1125 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 625 645 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele04g1799 1125 Gene3D Transcription termination factor 3, mitochondrial 962 1113 IPR038538 -
Lele04g1799 1125 Gene3D Transcription termination factor 3, mitochondrial 166 380 IPR038538 -
Lele04g1799 1125 CDD AP3_Mu_N 461 600 - -
Lele04g1799 1125 FunFam AP-2 complex subunit mu, putative 459 600 - -
Lele04g1799 1125 Pfam Adaptor complexes medium subunit family 625 872 IPR028565 -
Lele04g1799 1125 Gene3D Mu homology domain, subdomain B 625 868 - -
Lele04g1799 1125 SMART mt_12 882 913 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 180 212 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 1021 1050 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 318 352 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 108 139 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 918 950 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 251 281 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 SMART mt_12 1051 1085 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 Pfam mTERF 1032 1103 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 Pfam mTERF 872 1027 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 Pfam mTERF 265 369 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 Pfam mTERF 94 321 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 PANTHER CGI-12 PROTEIN-RELATED 57 375 IPR003690 GO:0003690|GO:0006355
Lele04g1799 1125 Gene3D Mu homology domain, subdomain B 730 871 - -
Lele04g1799 1125 PRINTS Clathrin coat assembly protein signature 558 585 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele04g1799 1125 PRINTS Clathrin coat assembly protein signature 688 715 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele04g1799 1125 SUPERFAMILY SNARE-like 459 600 IPR011012 -
Lele04g1799 1125 Gene3D - 459 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1799 Lele-ChrLele04 22346030 22355610 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lele04g1799 Adap_comp_sub 9.7e-61 CL0448