Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1789 ATGGATAATGCAAACGAAGCATCGTCGAGTTTTGCATCATCTTACTTATCAAATGGTTCAAGTAATCCCAACATATCTGCATGCACTAGCCATGAGCATGTGGCAAATCTTGAGAATTTGAGCCTCAGTAAGCTGAGTGGAAGCCTTGAGAAGCTATTGATAGAAGCTGAATATGACTATAGTGACATTGAAATTGTTGTCGAAGGCGAACCTGTCGGTGTTAATAGGTGTATATTGGCTTCACGTAGTCAGTTTTTTCATGAACTTTTTAAGAAAGGAAATGATGGCTCAGTGAAGGAAGGTAGTAAGCCAAGGTATATCATGTCAGACCTGGTGCGTTACGGCGTCGTTGGATACGAAGCGTTCTGTGTTTTCTTGCACTATTTGTATACTGGAAAGCTGAAGGCGTCGCCTCCAGAAGTATCAACATGTGTTGATGAAACATGTGTACATGATGCATGCCGGCCTGCTATTAATTATGCTTTGGAGCTAATGTATGCTTCTGCCAGGTTTCAGATGAAAGAGCTTGTTTTACTTGTTCAGCGGCGTCTCCTCAATTTTGTTGAGAAAGCTCTTGTAGAAGACGTGATTCCTATTCTTATGGCTGCCTTCCACTACCAACTAGACCAGCTTCGGTCACACTGCATCCAAAGATTAGTGAGATCTGACCTTGAGAACACAACTTTGGAGAGAGAGCTCCCACCTGAAGTTTTTAGTGAAATCAAATCAGTCCGACGCAAAGCTCTGGCAGAATCCACTCCTCATGCAATGGAAGTGGAACCTTCAAATGAAAAAAGTATTAGGAGAATCCTTAAAGCATTGGACTCTGATGATATGGAGCTGATGACTCTTCTTTTGGATGAATCTAATGTCACTCTAGATGATGCTTATGCCCTACACTATGCCTGTGCCTATTGTGATTCTAAGATTGTTACAGAAGTTCTTAATCTTGGGTTGGCTGACATAAACCATACAAATCCCCGAGGGTATTCAGTTCTTCATGTGGCTGCAAGGCGCAAAGATCCGACAATTTTAGTAGCGTTGTTGACTAAAGGGGCCTGTGTATCAAATATCACACCAGATGGACAAACGGCTGTTGCAATTTGTCGGAGGATGACAAGACCCAAGGATTACAATGAGATAGCAGCGCAAGGGAAGAAATCTAACAAAGACAAGCTCTGTGTTGATCTCCTGGAGAGAGAAATAAGAAGAACTTCAATGTCTGTGAATGCATCTGTTTCATCAGACTTAACTGCTGATGATTTGCACATGAGACTTGATTACCTGGAAAATAGAGTTGCTTTTGCTAAGTTATTGTTTCCCGCTGAGGCTAAGGTGGCCATGGATAATGCTGAGGCAGAGTCAACACTGAATGCAAACCGATCAAGTGGCAACCTAAGAGAAGTTGATCTAAATGAAACTCCTTCTCTGAGAACCAGAAAACTTCAGTTAAGATTGAAAGCCCTTGTGAAAACAGTTGAGAACGGCCGGCGCTTCTTTCCCCATTGCTCTGAGGTTCTTGATAAGTTTCTAGATGACGATATGCCGGATATTTTCTTCTTAGAGAAGGGTAGTGAACAAGAACAGAGAATGAAGAAGCAACGCTTCATGGAGCTTAAAGATGATGTTCAGAAGGCATTTCATAAGGATATGGCTGGAAACAATGGGTCAGGCTTTTCCTCCTCAGTTTCTTCCTCATCACCCTCATCTAAGAAAGGAGGACTCAGCCAAAGAGTAAGGAAAAAGTGA 1749 0.4225 MDNANEASSSFASSYLSNGSSNPNISACTSHEHVANLENLSLSKLSGSLEKLLIEAEYDYSDIEIVVEGEPVGVNRCILASRSQFFHELFKKGNDGSVKEGSKPRYIMSDLVRYGVVGYEAFCVFLHYLYTGKLKASPPEVSTCVDETCVHDACRPAINYALELMYASARFQMKELVLLVQRRLLNFVEKALVEDVIPILMAAFHYQLDQLRSHCIQRLVRSDLENTTLERELPPEVFSEIKSVRRKALAESTPHAMEVEPSNEKSIRRILKALDSDDMELMTLLLDESNVTLDDAYALHYACAYCDSKIVTEVLNLGLADINHTNPRGYSVLHVAARRKDPTILVALLTKGACVSNITPDGQTAVAICRRMTRPKDYNEIAAQGKKSNKDKLCVDLLEREIRRTSMSVNASVSSDLTADDLHMRLDYLENRVAFAKLLFPAEAKVAMDNAEAESTLNANRSSGNLREVDLNETPSLRTRKLQLRLKALVKTVENGRRFFPHCSEVLDKFLDDDMPDIFFLEKGSEQEQRMKKQRFMELKDDVQKAFHKDMAGNNGSGFSSSVSSSSPSSKKGGLSQRVRKK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1789 582 SUPERFAMILY Ankyrin repeat 268 372 IPR036770 -
Lele04g1789 582 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 236 392 - -
Lele04g1789 582 Pfam BTB/POZ domain 58 177 IPR000210 GO:0005515
Lele04g1789 582 Gene3D - 262 402 IPR036770 -
Lele04g1789 582 CDD BTB_POZ_NPR_plant 50 175 - -
Lele04g1789 582 ProSiteProfiles Ankyrin repeat profile. 328 360 IPR002110 GO:0005515
Lele04g1789 582 MobiDBLite consensus disorder prediction 546 582 - -
Lele04g1789 582 ProSiteProfiles BTB domain profile. 61 138 IPR000210 GO:0005515
Lele04g1789 582 SMART ANK_2a 328 357 IPR002110 GO:0005515
Lele04g1789 582 SMART ANK_2a 294 324 IPR002110 GO:0005515
Lele04g1789 582 Pfam Domain of unknown function (DUF3420) 223 271 IPR024228 -
Lele04g1789 582 SMART BTB_4 61 188 IPR000210 GO:0005515
Lele04g1789 582 Gene3D Potassium Channel Kv1.1; Chain A 25 220 IPR011333 -
Lele04g1789 582 PANTHER REGULATORY PROTEIN NPR3 12 570 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele04g1789 582 MobiDBLite consensus disorder prediction 554 574 - -
Lele04g1789 582 ProSiteProfiles Ankyrin repeat region circular profile. 328 353 - -
Lele04g1789 582 Pfam Ankyrin repeat 329 358 IPR002110 GO:0005515
Lele04g1789 582 SUPERFAMILY POZ domain 52 186 IPR011333 -
Lele04g1789 582 Pfam NPR1/NIM1 like defence protein C terminal 370 566 IPR021094 -
Lele04g1789 582 FunFam Regulatory protein NPR3 35 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1789 Lele-ChrLele04 22310079 22313477 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele04g1789 NPR1_like_C 1.5e-81 No_clan