Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1747 ATGGAGGTTCCAAATAATAACCAGCAAGCAGCTGAAGGAGGAGGAGGAGGAGGGTCGTCTTCATCTCTGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACGAATAGGCAAGTGACTTTCTGTAAGAGACGTAATGGTTTACTCAAGAAGGCTTATGAATTGTCTGTTCTTTGTGACGCTGAAGTCGCCCTCGTCGTCTTCTCTACCCGTGGCCGCTTGTACGAGTATGCCAATAACAGTGTTAGGGCAACTATTGAAAGGTACAAGAAAGCATGCGCCGCTTCCTCAAACACAGAATCTGTAGCTGAAGCTAACACCCAGTTTTACCAGCAAGAATCATCCAAGTTAAGAAGGCAGATACACGACATTCAGAATCTAAACAGGCACATTCTGGGTGAAGCTCTGAGCACATTGAGTCTGAAGGAGCTTAAAAACCTAGAGGGAAGACTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCACGAAACATTGTTCGCTGAAGTTGAATTCATGCAAAAGCGGGAAATGGAGCTTCAAAACCATAACAATTATCTAAGAGCAAAGATAGCAGAACAGGAGAAGGCACAACAGCAGCAGCAGCAATCCAGCGTGATGCAGCAGCAGGGAAGTGTGTGTGAGTCAATGCCATCACAATCTTATGACCGCAACTTCTTCCCTGCAAATCTCTTGGCTTCTAATAATCATCACTATTCTTCTCATAGTCAAGATCACACTGCTCTCCAGCTTGTGTAA 774 0.4393 MEVPNNNQQAAEGGGGGGSSSSLKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSTLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQEKAQQQQQQSSVMQQQGSVCESMPSQSYDRNFFPANLLASNNHHYSSHSQDHTALQLV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1747 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 209 - -
Lele04g1747 257 MobiDBLite consensus disorder prediction 1 30 - -
Lele04g1747 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 82 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 ProSiteProfiles MADS-box domain profile. 26 86 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 FunFam agamous-like MADS-box protein AGL11 38 121 - -
Lele04g1747 257 Pfam K-box region 110 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele04g1747 257 ProSitePatterns MADS-box domain signature. 28 82 IPR002100 GO:0003677|GO:0046983
Lele04g1747 257 ProSiteProfiles K-box domain profile. 112 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele04g1747 257 Gene3D - 38 107 IPR036879 GO:0003677|GO:0046983
Lele04g1747 257 CDD MADS_MEF2_like 27 103 IPR033896 GO:0000977|GO:0045944
Lele04g1747 257 SUPERFAMILY SRF-like 27 102 IPR036879 GO:0003677|GO:0046983
Lele04g1747 257 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1747 Lele-ChrLele04 21990912 21996053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1747 10 257 MADS-box Gene Family AT3G58780 68.254 1.91e-117 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele04g1747 K-box 2.8e-25 No_clan