Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1725 ATGGCTCTCGGTTTTGTATTCGAAGCTCCCAGCGACGAAGAAATCGAGCGCTCTGATTCTGAAGACGAAGAACAGGAACAAAGCCAAGAAGAGGAAGCAGAGGAGCAGAGTGATTATGATAATGATGATGACGATGAAGAAGAAGGAGGAGAAGAAGGAGAAGAAGAAAGAGCACGAGTCTCGAATAAGAAATCTCAATCCCCATGGGACTTCGCGAAGTACTCTGAGTCCGTCGCAGAGGAACATGCCCGACGAAGCACAACCTCAGTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGCTCCACCGAGCTCAGAAAGCTCGTCGAAGACGACCAGGAGAGCTCGGAGTCCGAACCCGACAGACAAGAGGATTATAGACCAGAAGAGGAAGAAGATGAAGGTGGAAATGTAGGTGAGAGCAAGTCTTTCTTCGCGCTATCTGACGGAGTCTCATTCCATGCTGATTCATTCATGGAGCTTAATTTGTCGCGTCCTTTGCTCCGGGCTTGTGAGGCCTTAGGATACGTTAAACCGACACCAATTCAGGCAGCGTGTATACCACTTGCATTGACCGGTCGTGATATATGTGGAAGTGCCATTACCGGTTCTGGGAAGACAGCTGCATTCTCACTGCCTACTCTGGAGAGGCTTCTGTATCGTCCAAAACGTGTGCAGGCCATTAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCGGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGATGTTGCCTGGTCGTTGGCGGTCTGTCTACAAAGGTGCAAGAGGCGGCCTTGAGATCTATGCCGGATATTGTTGTTGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCAATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTAGAGCTTGGTTTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAAAAAAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTTGATGAACTTATTAAACTTTCTCTAACAAAACCCTTGCGTCTTTCTGCTGACCCATCTGCAAAACGGCCAGCAACCTTGACCGAGGAGGTGGTTAGAATAAGAAGAATGCGGGAAATGAATCAGGAAGCAGTTCTTCTTGCATTATGTTCCAAAACTTTTATATCTAAAGTGATCATATTCAGTGGAACAAAACAAGCTGCGCATAGGTTGAAGATTATATTTGGATTAGCTGGTTTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAAGCTTTAGAGCAGTTTAGGAAGCAGCAAGCCGACTTTTTGATTGCAACTGATGTGGCTGCTCGAGGTCTAGATATTATCGGTGTTCAAACAGTCATCAACTTTGCATGTCCACGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATGTGCTGTCACGTTTGTGACTGACAATGACCGGTCACTTTTAAAAGCAATTGCAAAGAGGGTGGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAACAATCTGTAATTAAGTGGTCTCAAACTATTGAGCAAATGGAGGATGAAATTGCTGCAATTCTTGGTGAAGAGAGGGAGGAAAGAGCCCTCAGGAAAGCTGAAATGGAGGCAACAAAGGTTGAAAACATGATTGAGCACAGGGAAGAGATATATTCCCGGCCCAAAAGAACTTGGTTTATGACAGGGAAGGAGAAGAAGCTTGCTGCAAAAGTAGCCAAGACGTCTAACGGAAAGGAAAAGGGCTCTGGGAAGGAAGTAATTAGTGCTGAACAAGCCGAAGCCTTAAGAATGAAGGAAAAGAGGAAGCGAGAACGAGAAAAAAATTTGCCCAGGAAGCAGCGCCGAAAATTGGAAGCTGCTAGAGAGATTTTGGAGGATGAAGGTCATTTTGAGAAGCCAGAAGCTAACGAGAAAAATAAGAAAGAAAAGACTGGAATGTCGCTTGTTGATGTGGCATACCGACGAGCGAAAGCAGTTAAAGCCGTGAAGAAGGCTCTAGATGCTGGCAAAATTGTGAAGAAGGGTAAGAAGAAATCGGATCATTCTTCACGAAAGACTCCTTCAAGGACAGAGGAAATGCGGGAGCTTTTCCAAACTGATATGAGTGAGAAAAAACAAGAAAGTGTTGGTGGACCAGGGAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAGTTGTTGCTTGTGCTTGTGGAAGCATAATGACAGGCATGCAGACCTATGTGTAGCAAATAGTGAATATGACCGTGGGACTTGGTGGATAGAGCTGCAAATATCTTCTCACTCTTCTCATGTCAGCATGAATCTTCTCTACTCAATTTTGTAA 2430 0.4481 MALGFVFEAPSDEEIERSDSEDEEQEQSQEEEAEEQSDYDNDDDDEEEGGEEGEEERARVSNKKSQSPWDFAKYSESVAEEHARRSTTSVDQKIAKAIKERSTELRKLVEDDQESSESEPDRQEDYRPEEEEDEGGNVGESKSFFALSDGVSFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREMNQEAVLLALCSKTFISKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQADFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRVGSKLKSRIVAEQSVIKWSQTIEQMEDEIAAILGEEREERALRKAEMEATKVENMIEHREEIYSRPKRTWFMTGKEKKLAAKVAKTSNGKEKGSGKEVISAEQAEALRMKEKRKREREKNLPRKQRRKLEAAREILEDEGHFEKPEANEKNKKEKTGMSLVDVAYRRAKAVKAVKKALDAGKIVKKGKKKSDHSSRKTPSRTEEMRELFQTDMSEKKQESVGGPGKKSKSSFKSKSRYKRSCCLCLWKHNDRHADLCVANSEYDRGTWWIELQISSHSSHVSMNLLYSIL 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1725 809 MobiDBLite consensus disorder prediction 1 141 - -
Lele04g1725 809 SMART ultradead3 175 376 IPR014001 -
Lele04g1725 809 MobiDBLite consensus disorder prediction 703 751 - -
Lele04g1725 809 MobiDBLite consensus disorder prediction 114 136 - -
Lele04g1725 809 MobiDBLite consensus disorder prediction 75 113 - -
Lele04g1725 809 Gene3D - 119 363 IPR027417 -
Lele04g1725 809 SMART helicmild6 411 496 IPR001650 -
Lele04g1725 809 Pfam DEAD/DEAH box helicase 180 350 IPR011545 GO:0003676|GO:0005524
Lele04g1725 809 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 535 IPR001650 -
Lele04g1725 809 MobiDBLite consensus disorder prediction 14 53 - -
Lele04g1725 809 MobiDBLite consensus disorder prediction 603 647 - -
Lele04g1725 809 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Lele04g1725 809 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 361 IPR014001 -
Lele04g1725 809 Pfam Helicase conserved C-terminal domain 392 496 IPR001650 -
Lele04g1725 809 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 307 315 IPR000629 -
Lele04g1725 809 Gene3D - 376 546 IPR027417 -
Lele04g1725 809 MobiDBLite consensus disorder prediction 715 742 - -
Lele04g1725 809 CDD SF2_C_DEAD 373 505 - -
Lele04g1725 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 516 IPR027417 -
Lele04g1725 809 Coils Coil 618 640 - -
Lele04g1725 809 Coils Coil 554 574 - -
Lele04g1725 809 MobiDBLite consensus disorder prediction 655 674 - -
Lele04g1725 809 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 714 - -
Lele04g1725 809 CDD DEADc_DDX27 167 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1725 Lele-ChrLele04 21821585 21828921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1725 144 513 Eukaryotic Initiation Factors Gene Family AT3G13920 33.780 6.55e-53 188