Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1668 ATGGCTAGGGAAGAGGAGAGACATCTGGAGACTCAACTAGAGCTTCAATTGCAGGAACAGAGGGATTCACTCTCTGCTCTCGATGAAGCTTTGGTCTCTGATCCATCCAATCCCGAGCTTCTCCTGGTTCATGAGGAGCTTGTTCATGCAATCAAGGATGCAGAGGAAGGGCTTCTTCACTTAAAGCGTACTCGATTATTTCATGAAGCAGATTCAGTGCTGAATAGATCCAATCTTTCTGCTCAAACAGAGAAAGTTGAGCCACTTGACCCCGCAGATGTTGCCCCAGAACCTCTAGAGGAACCACATTATTCTATTGGATCTAAATGTAGATTTCGTCACACTGATGGGCGGTGGTACAATGGTCAAGTAGTGCAGTTAAATAGTTCTTCAGCAAAAATTTCATTCCTTATGCCCACATCTGAGAATATGCTGATGTGCAAGTTTTTTCTGCAACAACGATGTCGATTTGGTACTAACTGTCGTCTATCACATGGTATTGATGTTCCACTGTCTTCCCTCAGAAAATTTGTTCCTACCATCTGGAAGCAGTCCCTGGTTGGTTCAAGTATATGGGCGGTCTCAGATGTTAATGCTGGCATTTGGAAGGAAGCCGAGCTTGAATCCTGGGATGAAGGACTTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGCGAAGTTAGGAGCAGAAGCTATGGCGTTATCTGAATGTGCAGAAGTGATTGATGAAGAGAGTGATTCCAGCTCGGAACAGTCTGATTTTAGTGACTATGAAGATGACCCACAAGGTATAGGCTTTCTGGAAAGCACCACCCTGCAGCGGGGTATTCAGACTGAAACTGCTATATTTGCGAAGTGGGAGAATCACACTAGGGGTGTAGCTTCCAAAATGATGGCTAATATGGGTTACCGTGAAGGTATGGGTTTAGGTGTTTCTGGTCAAGGAATGCTTAATCCCATCCCAGTGAAGGTCCTTCCTGCAAAGCAATCCTTAGATCATGCTCTTGAATCTCATAAAGATAAAGGAGAAGAGAGCAAAGACAATCGAGGTAAGAAACGAAGTAGAGGTGGTAAGAGAAAACGTGACAAGAAATTTGCAGAGGCGATTCGGGTAGCAAAAGAAGAGGAGGAATCGGTATCAGATGTATTTACACTAATAAATAATCAGCTGGCAATGCATAGTGCAGCTATGAATGGTGGATCAGTGAAGAAGCAGCAAAGTAAAGGTTCAGGAGAAGGCAAAAAGGTTGATAGGCGGGCTTTGATTGCTTATGAGGACGAGGTAAAGGACTTGAGAATTCGGGTTGAGAAGCTTGAAGAAATGGTGAATAGAAACAAGAAAGAGAAGGTAGTTTACGAGGCCGCCATGAGAAAATTAATCGAAACCCGCAAGGCTTTAGCAGAGGCCGAAGCAGTCCATGTCTCCGCCTCAAACGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1488 0.4415 MAREEERHLETQLELQLQEQRDSLSALDEALVSDPSNPELLLVHEELVHAIKDAEEGLLHLKRTRLFHEADSVLNRSNLSAQTEKVEPLDPADVAPEPLEEPHYSIGSKCRFRHTDGRWYNGQVVQLNSSSAKISFLMPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSSLRKFVPTIWKQSLVGSSIWAVSDVNAGIWKEAELESWDEGLGVGQVVFRDDGSSAKLGAEAMALSECAEVIDEESDSSSEQSDFSDYEDDPQGIGFLESTTLQRGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMLNPIPVKVLPAKQSLDHALESHKDKGEESKDNRGKKRSRGGKRKRDKKFAEAIRVAKEEEESVSDVFTLINNQLAMHSAAMNGGSVKKQQSKGSGEGKKVDRRALIAYEDEVKDLRIRVEKLEEMVNRNKKEKVVYEAAMRKLIETRKALAEAEAVHVSASNAVVSKEKEKRWLKF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1668 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 495 - -
Lele04g1668 495 Coils Coil 1 30 - -
Lele04g1668 495 MobiDBLite consensus disorder prediction 337 367 - -
Lele04g1668 495 SMART G-patch_5 291 337 IPR000467 GO:0003676
Lele04g1668 495 Gene3D - 105 178 - -
Lele04g1668 495 MobiDBLite consensus disorder prediction 81 100 - -
Lele04g1668 495 MobiDBLite consensus disorder prediction 337 354 - -
Lele04g1668 495 Pfam G-patch domain 293 335 IPR000467 GO:0003676
Lele04g1668 495 ProSiteProfiles G-patch domain profile. 293 339 IPR000467 GO:0003676
Lele04g1668 495 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Lele04g1668 495 Coils Coil 424 475 - -
Lele04g1668 495 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lele04g1668 495 Pfam CCCH-type zinc finger 146 166 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1668 Lele-ChrLele04 21410392 21414411 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele04g1668 G-patch 4.8e-12 CL0449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1395 01 8559401 8563455 Lele04g1668 04 21410392 21414411 hybridization
Lele02g1682 02 20480188 20484223 Lele04g1668 04 21410392 21414411 hybridization