Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1645 ATGGTTGCTGAGGGAACGGAACCGCCGGAGGAGACGCGATCGGAGGGCTTGCCGGTGAAAAGGCCGATTGAGAATGGTGGGGCTGAGGAATTGACTAAGAAGCCTAAGGTTGAAGCAGCTGATGCGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACGATGGCGGCAATGCGAGGAGGGAAGAAGCCCGCTAATGTGGAGATTGAGTTGATGAAGGAAGCGAGGATGAAGTTGGTGGACTTGTGTCAAGGGATGGCTCCTAAGGATATTGTGGCGAGGGAAGCTGTGAGGACTGTGATTGAGGATCTGGGATTGAACGGGAAGATTAAAGATCAGAGATTAGGGTTTCAAAGTCCAAAGATGTCTATAACTGAAAGGTTCGCACTCTCCAAGTTGAAGATGGAAGAATCAAAGAAGTTTCCTGAACATTCTGCTCAATCTACTTCTCAGCCATTGCAAACAAGCATGGGTTCTGGAATGGTTGAAAACCGTATGCCATCTCATACTGTTCGAATGTTTCCCATGGACAAATCAAGCCACACAGGACTCTCTCCTTCTGGTACCATAACTTCTCCTACTGTGATTCATGTTTCTGCAGGATCATCTGCTGCTTTGCAATATCAATCAACTACTAGTGAAGTAAAACCGCCAATAGTTTCTGGTGGAATGCCTAGCAGTCACTTGGCTAGAAATTCATCTTCATTAGCATGGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTTGCTGCATGCTCAAGCAAACTCTTCATCAAACCAACCCTTGGTGACTGCTCCAACATGGTCAATGCAAACTCAAACTCAATCTGCTTCATTAGCTAGAAGTACACAAGAAAACAAAGTGACTGGACATAACCCTGTCAAGGTTGAGGGAATGGTTGACCTAACTGGGCCCAGAGCTGCTTCACAAATAGCAAGGGATCAGGGCTATAGACCCTTAGTAACTCAAACAATGCCTGGAAATTTTTCTAGCTTGCACCAGCCATTGCAGGGCATGAACATTGTTCAGCCTCCTTCACTTCCTAATAATCATGCTGAAATTGCAAACATTGTCCAGAAACTGTTACAACCTAAGCTGCCTGAGCATCGCACATGGACCCCTCCATCAAGGGATTATATGAACAAGGCATTTACTTGCCAGATGTGTGATCTCGCTGTTAATGAAGTGGATACTGTGCTTCTTTGTGACGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGACATTAAGCGGTGGAAAGCCTTTACCTCCAAAATATGGTCGTGTCATGAGGTCCGCGAACACTCCACCAAAGCTGCCCTCTAACACAGGTGGAGTCCAACCATCCTTAGAGAAGAAAACTGGAGTTGCAGCTCCAAAGGTCAGCTCACAAGAGTTAACAATAAATGGAGGCTCTTTTTCAACTGATGCAGCCAGTAACAATGAAAATGCTGAGCTTCCATCTGTCTCTAAGATGCCTGATACAAAAGAAATGCAAGATAACACTCAGTCATCCAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAGTTCAGCTTCTAGTCCTTCTGTTCGCTCTGGCTTGCCAGGTGAAAGTTCTGCTGAACAAATAATTTCTGAGCCATCTACTTCTAAAGAGAGAACCTTCGCTTCAGAATCAGAAGTGTTTCCTCAATTAACTGAGTCAGTTAAACCTAACAATTTGCAATTGTCAAAAAATGTACAAGTTGAACTGACACCACTACCAAACAATGTTGAAGTTTCGTTGTATAAACATGCTGACAATAGTTTGACAGATAATAACAGAAAGGAATCTCATGGGGGAGAAAATTTGATATATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATGCTGAAGGTAGACAATGTACTGCGTTATATTCAGATGGCTTACCTGCAGTAGAATGGGTTGGTGATATTGTACAACCTGTTGATGAGAAAAGGTTTTACCAATCTTGCCGTGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAATCCAGTCATGGCAAGTTAATTCCATCTAAACTGCAGTCTATGTTTGAAGATTGCAAAACTGGGATGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAATATCCCTCACCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCCATTCAAGGACCCTGTGAAGTCCTCCCCTCTCTTAAATTTCAACAAGAAAACAATAGACGAAGAGGGTTAGAACCTGAGGAAAGTGCTAGACTTCAGCCAATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAGTTATTTCAGCCTGTTACCAGTTGA 2529 0.4326 MVAEGTEPPEETRSEGLPVKRPIENGGAEELTKKPKVEAADASSGELKRVAEIVLVLSTMAAMRGGKKPANVEIELMKEARMKLVDLCQGMAPKDIVAREAVRTVIEDLGLNGKIKDQRLGFQSPKMSITERFALSKLKMEESKKFPEHSAQSTSQPLQTSMGSGMVENRMPSHTVRMFPMDKSSHTGLSPSGTITSPTVIHVSAGSSAALQYQSTTSEVKPPIVSGGMPSSHLARNSSSLAWPKVEQPQFKVDGGSSGPYLLHAQANSSSNQPLVTAPTWSMQTQTQSASLARSTQENKVTGHNPVKVEGMVDLTGPRAASQIARDQGYRPLVTQTMPGNFSSLHQPLQGMNIVQPPSLPNNHAEIANIVQKLLQPKLPEHRTWTPPSRDYMNKAFTCQMCDLAVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSANTPPKLPSNTGGVQPSLEKKTGVAAPKVSSQELTINGGSFSTDAASNNENAELPSVSKMPDTKEMQDNTQSSSSKHMDEKPDPNISIKSLSSASSPSVRSGLPGESSAEQIISEPSTSKERTFASESEVFPQLTESVKPNNLQLSKNVQVELTPLPNNVEVSLYKHADNSLTDNNRKESHGGENLIYDIKRDDQYVALANSDKSSGTHAEGRQCTALYSDGLPAVEWVGDIVQPVDEKRFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDCKTGMKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSLKFQQENNRRRGLEPEESARLQPIFLCRWFYDGVKKLFQPVTS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1645 842 MobiDBLite consensus disorder prediction 467 481 - -
Lele04g1645 842 MobiDBLite consensus disorder prediction 456 591 - -
Lele04g1645 842 Pfam PHD-finger 399 446 IPR019787 -
Lele04g1645 842 CDD BAH 713 841 - -
Lele04g1645 842 ProSiteProfiles BAH domain profile. 714 841 IPR001025 GO:0003682
Lele04g1645 842 MobiDBLite consensus disorder prediction 550 591 - -
Lele04g1645 842 ProSiteProfiles Zinc finger PHD-type profile. 396 448 IPR019787 -
Lele04g1645 842 MobiDBLite consensus disorder prediction 492 537 - -
Lele04g1645 842 MobiDBLite consensus disorder prediction 149 164 - -
Lele04g1645 842 Gene3D - 694 842 IPR043151 -
Lele04g1645 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 452 IPR013083 -
Lele04g1645 842 MobiDBLite consensus disorder prediction 1 38 - -
Lele04g1645 842 SUPERFAMILY FYVE/PHD zinc finger 390 453 IPR011011 -
Lele04g1645 842 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 841 - -
Lele04g1645 842 SMART PHD_3 398 446 IPR001965 -
Lele04g1645 842 MobiDBLite consensus disorder prediction 144 164 - -
Lele04g1645 842 ProSitePatterns Zinc finger PHD-type signature. 399 445 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1645 Lele-ChrLele04 21267933 21272236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1645 398 446 C2H2 Transcription Factor Family AT3G01460 42.857 2.42e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele04g1645 PHD 9.6e-09 CL0390