Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1643 ATGTACTTGAACTGCAGTAAACGACTTACAATTTCTTGCTCATTGTATAGATTGTTTCTTACCATTGAAGAAATTGCAAGTGATTGGGACTACTGTGGGAAGAAATTGCAAAATTCTCGCCTCCTTAAAAGGACGATGGCATCATCTTCCGACTCATGGATGAAGGAATATAATGAAGCCTTGAAACTTGCTGATGATATCAGTGGCATGATTTCCGAATGGAATTCATTTCCTACATCTGGACCTGAAACCCAGCGCCATGCATCTGCTATAAGAAGGAAGATAACAATATTAGGGACCAGACTTGATAGCTTGCAATCCCTTTTGTCAAAGTTTCCCGGGAAACAGCCTATATCTGACAAGGAGCTGAATCGGCGTAAGGACATGATTGCGAATTTGAGGTCTAAAGTTAACCAAATGGCATCAACATTGAATATGTCTAACTTTGCAAACAGGGATAGTTTGCTTGGACCAGAGACAAAACCAGCTGATGCCATGAGCAGAACAGTTGGCTTGGATAACGGTGGAGTTGTTGGACTTCAACGGCAAATTATGAGAGAGCAAGACGAGGGCCTTGAGAAATTGGAGCAGACTGTAACAAGTACGAAACATATTGCATTGGCTGTAAATGAAGAACTGGATTTACACACTAGACTCATTGATGACTTGGACCAGCATGTAGATGTTACAGATTCTCGGCTGCGGAGGGTTCAGAAGAACTTGGCAATTTTGAACAAGCGTACCAAGGGTGGTTGCTCCTGCTTGTGTTTGCTTTTATCAGTTGTTGGTATAGTGGTTTTGGTTGCTGTTATATTTCTGTTGATCAAATATTTGTGA 837 0.4134 MYLNCSKRLTISCSLYRLFLTIEEIASDWDYCGKKLQNSRLLKRTMASSSDSWMKEYNEALKLADDISGMISEWNSFPTSGPETQRHASAIRRKITILGTRLDSLQSLLSKFPGKQPISDKELNRRKDMIANLRSKVNQMASTLNMSNFANRDSLLGPETKPADAMSRTVGLDNGGVVGLQRQIMREQDEGLEKLEQTVTSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCLLLSVVGIVVLVAVIFLLIKYL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1643 278 PANTHER SYNTAXIN 76 264 IPR045242 -
Lele04g1643 278 SMART tSNARE_6 177 244 IPR000727 -
Lele04g1643 278 Gene3D - 184 246 - -
Lele04g1643 278 Pfam SNARE domain 219 269 IPR000727 -
Lele04g1643 278 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 182 244 IPR000727 -
Lele04g1643 278 CDD SNARE_Qc 185 242 - -
Lele04g1643 278 SUPERFAMILY t-snare proteins 58 145 IPR010989 GO:0016020|GO:0016192
Lele04g1643 278 SUPERFAMILY SNARE fusion complex 174 243 - -
Lele04g1643 278 FunFam syntaxin-51 isoform X2 184 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1643 Lele-ChrLele04 21249975 21254904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1643 46 278 SNARE and Associated Proteins AT1G16240 72.103 2.65e-124 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1643 04 21249975 21254904 Lele04g1643 04 21249975 21254904 ECH
Lele01g1376 01 8463736 8465580 Lele04g1643 04 21249975 21254904 hybridization
Lele02g1657 02 20316221 20318991 Lele04g1643 04 21249975 21254904 hybridization