Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1642 ATGAGTGCAGTTCCGAAAGAGTCAATTGAAGTCATTGCGCAGAGCGTTGGCATCTCCAATTTGTCCCCTGATGTCGCTCTCGCTCTCGCTCCCGATGTGGAGTATAGGGTTCGCGAAATTATGCAGGAGTCTATAAAATGCATGCGCCACTCAAAGCGAATTGTTCTTACGTCAGATGATGTGGATAGTGCACTTAAATTAAGAAATCTGGAGCCGATATATGGTTTCACCTCTAATGATCCTCTGCGGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTTTACGTTGATGACAAAGATGTTGATTTTAAAGATGTGATGGAAGCACCACTGCCAAAAGCACCTCTTGATACATCAGTTACCACTCATTGGCTGGCAATTGAAGGTGTACAGCCTGCAATTCCTGAAAATGCTCCCATTGAAGCTCCTGAAACAAGAAAATCTGACTATAAGGAAGAACTTCCTGTTGATATTAAGTTGCCTGTTAGACATGTACTTTCAAGAGAGCTTCTGCTTTACTACCACAAAATAACTGAGCTGATATCAAACAAGCCAAGCACCATTCTCTTGAATAGAGCATTAATTAGCTTGGCAACAGATTCGGGACTCCATCCTTTGATTCCTCATTTCTCATACTTTGTTGCTGGTGAGGTGGCTCAAAATTCAAATAATTTAAATCTTTTATTTGCTTTGATGCGTCTTGGTCGGAGCCTTATGCAAAATCCTCACATACACATAGAGCCTTATTTACATCAACTGATGCCGTCTATTATGACCTGCCTTGTTGCAAAAAAGCTAGGGAATAATAGACTATCTGATAATCACTGGGAACTCAGAAACTTCAGTGCAAACCTGGTTGCTTCGATATGCAAAAGATTTGGGCATGTTTATCATAACCTTCAGCCACGTGTGACAAAGACATTGCTTCATGCTTTCTTGGACCCTACAAAATCTCTACCTCAACATTATGGTGCAATTAAAGGGATAGCAGCTCTTGGATCCAGCATGGTTCGCATGCTTATACTTCCAAATCTTGAGGCATATCTGCTTCTTCTTGAACCAGAAATGCAACTTGAGAAGCAAAAAAACGCATTAAAGAGGCATGAAGCATGGCAAGTTTATGGAGCATTGCTGTGCGCAGCAGGCCAATGTATTCATGAACGGGCCAAAGTGTACAGCCGTATGCTCTCTCCTGCTTCTACTCGTGCTTTTTCAAGAGGCTATGCAAAAGTCATGCCGGCAACGTCAAGCAAACGTAAAGCCAGCATAGACAATCTAATGCAGCAACCTCCACTGAAGAAAATTGCAACAGATGTTTCTGGGGGTTTGATGCCTATGAACTCCTTGCCAGTTGATATGCAAATGCAAGGCACACCAGGTGGATTTTCCAATACAATGGGAGCTCCTAACGCGGGCATGTCCTCAATGGCTCGTCAGTTATTAAATGAAAAGAACCAAGGAAGAGAGGTTGGAGGTCAACAAGGTAAGGTATCAGCAACTCTTGCTCAGGCTTGGAAGGATGACATTGATGCCGGACATTTGCTATCATCTGTACATGAACTATTCGGCCATGGCGTTTTCTCCTTTATTCCAAAAGCTGAAGCATCTATATTCTTGTGA 1620 0.4259 MSAVPKESIEVIAQSVGISNLSPDVALALAPDVEYRVREIMQESIKCMRHSKRIVLTSDDVDSALKLRNLEPIYGFTSNDPLRFKRAAGHKDLFYVDDKDVDFKDVMEAPLPKAPLDTSVTTHWLAIEGVQPAIPENAPIEAPETRKSDYKEELPVDIKLPVRHVLSRELLLYYHKITELISNKPSTILLNRALISLATDSGLHPLIPHFSYFVAGEVAQNSNNLNLLFALMRLGRSLMQNPHIHIEPYLHQLMPSIMTCLVAKKLGNNRLSDNHWELRNFSANLVASICKRFGHVYHNLQPRVTKTLLHAFLDPTKSLPQHYGAIKGIAALGSSMVRMLILPNLEAYLLLLEPEMQLEKQKNALKRHEAWQVYGALLCAAGQCIHERAKVYSRMLSPASTRAFSRGYAKVMPATSSKRKASIDNLMQQPPLKKIATDVSGGLMPMNSLPVDMQMQGTPGGFSNTMGAPNAGMSSMARQLLNEKNQGREVGGQQGKVSATLAQAWKDDIDAGHLLSSVHELFGHGVFSFIPKAEASIFL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1642 539 Pfam TAF6 C-terminal HEAT repeat domain 257 345 IPR011442 GO:0006367
Lele04g1642 539 SUPERFAMILY Histone-fold 2 66 IPR009072 GO:0046982
Lele04g1642 539 SUPERFAMILY ARM repeat 221 379 IPR016024 -
Lele04g1642 539 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Lele04g1642 539 Pfam TATA box binding protein associated factor (TAF) 1 66 IPR004823 -
Lele04g1642 539 Gene3D Histone, subunit A 1 67 IPR009072 GO:0046982
Lele04g1642 539 SMART TAF_cls 2 68 IPR004823 -
Lele04g1642 539 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 536 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Lele04g1642 539 CDD TAF6C 163 380 IPR011442 GO:0006367
Lele04g1642 539 FunFam Transcription initiation factor TFIID subunit 6 163 359 - -
Lele04g1642 539 Gene3D - 163 368 IPR046344 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1642 Lele-ChrLele04 21244082 21248349 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1642 04 21244082 21248349 Lele26g1557 26 12138729 12165058 CCT
Lele04g1642 04 21244082 21248349 Lele28g1549 28 12764668 12786204 CCT
Lele04g1642 04 21244082 21248349 Lele04g1642 04 21244082 21248349 ECH
Lele01g1375 01 8454751 8460801 Lele04g1642 04 21244082 21248349 hybridization
Lele02g1656 02 20310490 20315900 Lele04g1642 04 21244082 21248349 hybridization