Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1625 ATGAGAGATCGCGCGACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCAGAAAGAGTCACTATGGATAAGCACATAATTGATGGCCGCATAGTTGAAGCAAAGAAAGCTGTCCCCAGGGATGATCAGCAGATGATAAGCAGAACTTCTGGTAGCGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCTAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCCGTGGACAGAGTTCTTTATAAAAAATTCCATGAACTCAACGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGAGCCAGCCGAAGCCCGTTGTTAGGAAGTTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTATGCGCAGGGTTATAACATGAGTCCAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTAGTAGAAGTGGAATTTCCCCCTTTGGCACCAGTGGTTATGGAATGGGACTGAATCTTGATGCAGGGCTGAGTGCAGGATATGGAGGGACTTCCAATTATGGAAGCAACCTCGGATATGGTCGGATGATTAATCCTTTTTACAGTGGCAACTCAAGCAGATACACCACTCCTATAGGCTATAATGCTGGTAATGGGAGAAGCGATTCTCTAATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGTGGCCTAAGTAATGCCAATAACCAAGTCATTACCAGTGCTAGCTTGGGATCTGGAAGTGGTGCTTTTGGCGTTTCAATTAAGAATAATGGTGCAAATTGGGGTCAATCCTTTCCAACACAGGCTGGAGTGGCTGCTTCCGGGTATACCACTGGGATTAATGTTTATGAAGGCGGAGACAACAGTTTTGGATTAGGTGGTACTGGTTATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCTTCTACATTTTCTGCTTCAGCTGGTGGTTATGAAGGATCCTATGGGGATTTATACCATAACGGTTCAGTTTACAATGACTCAACTTGGCGGTCTACTGCTTCCGACCTAGATGGTTCTGGTTCATTTGGTTATGGACTTGGTGATATAGCCTCTGAGGATCCTGGAAAGAGTTCAGAGGGTTATATTGGAAACTACAATGTGTCAAGCAGACAACCTAACAGAGGAATTGCTGCCTAG 1320 0.4462 MRDRATGRARGFGFVVFADPAVAERVTMDKHIIDGRIVEAKKAVPRDDQQMISRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKKFHELNGKMVEVKRAVPKELSPGASRSPLLGSFGFNRASSYLNSYAQGYNMSPVGGYGVRMDGRFSPLTSSRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLGYGRMINPFYSGNSSRYTTPIGYNAGNGRSDSLMNSPSRNVWGNGGLSNANNQVITSASLGSGSGAFGVSIKNNGANWGQSFPTQAGVAASGYTTGINVYEGGDNSFGLGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHNGSVYNDSTWRSTASDLDGSGSFGYGLGDIASEDPGKSSEGYIGNYNVSSRQPNRGIAA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1625 439 SUPERFAMILY RNA-binding domain, RBD 1 67 IPR035979 GO:0003676
Lele04g1625 439 CDD RRM2_DAZAP1 67 146 IPR034131 GO:0003723
Lele04g1625 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Lele04g1625 439 MobiDBLite consensus disorder prediction 44 68 - -
Lele04g1625 439 FunFam Heterogeneous nuclear ribonucleoprotein 1 66 153 - -
Lele04g1625 439 SUPERFAMILY RNA-binding domain, RBD 68 238 IPR035979 GO:0003676
Lele04g1625 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Lele04g1625 439 SMART rrm1_1 70 142 IPR000504 GO:0003723
Lele04g1625 439 Gene3D - 1 51 IPR012677 -
Lele04g1625 439 MobiDBLite consensus disorder prediction 414 439 - -
Lele04g1625 439 Gene3D - 68 148 IPR012677 -
Lele04g1625 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 129 IPR000504 GO:0003723
Lele04g1625 439 MobiDBLite consensus disorder prediction 422 439 - -
Lele04g1625 439 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1625 Lele-ChrLele04 21107700 21110238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1625 9 148 Eukaryotic Initiation Factors Gene Family AT2G36660 30.921 1.10e-08 55.5