Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1623 ATGAGAGATCGCGCGACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCCCAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAACAGAACTTCTGGTAGTGTCCATGGCTCTCCAGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCCGTGGACAGAGTTCTTTATAAAACATTCCATGAGCTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGATCCAGCCGAAGCCTGTTGTTAGGAACTAGTTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTACGCGCAGGGTTATAACATGAGTACAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAATTTCCCCCTTTGGCACCAGTGGTTATGGAATGGGACTGAATCTTGATGCAGGGCTGAGTGCAGGATTTGGAGGGACTTCCAATTATGGAAGCAACCTCGGATATGGTCGGATGATTAGTCCTTTTTACAGTGGCAACTCAAGCAGATACACCACTCCTATAGGCTATAATGCTGGTAATGGGAGAAGCGATTCTCTAATGAACTCGCCTTCTCGAAATGTTTGGGGAAATGGTGGCCTAAGTAATGCGAATAACCAAGTCAGTGCTGGTGTTGGCTTGGGATCTGGAAGTGGTGCTTTTGGCGTTATGATTAAAAATAGTGGTGCAAATTGGGGCCAATCCTTTCCAACGCAGGGTGGAGGGGCTGCTTCTGGGTATACCACTGGGATTAATGTCTATGAAGGTGGAGACAATAGTTTTGGGTTAGGAGGTACAGGGTATGGAAGAAAAAGTGGTACAGGTGTAAATTCATCTTCTACATTTACTGCATCAACTGGTTGTTATGAAGGATCCTATGGGGATTTGTACCATAATAGTTCAGTTTACAGTGACTCGGCTTGGCGGTCTTCTACATCTGATCCAGATAGTTCTGGTTCATTTCGTTATGGGCTTGGTGGTATAGGCTCAGAGAACCCAGTAAAGACTTCAGAGGGAAGCTACAATGTTTCAAGCAGACAACCTAATAGAGGAATTGCTGCCTAG 1314 0.4482 MRDRATGRARGFGFVVFADPAVAERVIMDKHIIDGRPVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGSSRSLLLGTSFGFNRASSYLNSYAQGYNMSTVGGYGVRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGFGGTSNYGSNLGYGRMISPFYSGNSSRYTTPIGYNAGNGRSDSLMNSPSRNVWGNGGLSNANNQVSAGVGLGSGSGAFGVMIKNSGANWGQSFPTQGGGAASGYTTGINVYEGGDNSFGLGGTGYGRKSGTGVNSSSTFTASTGCYEGSYGDLYHNSSVYSDSAWRSSTSDPDSSGSFRYGLGGIGSENPVKTSEGSYNVSSRQPNRGIAA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1623 437 Gene3D - 1 51 IPR012677 -
Lele04g1623 437 Gene3D - 66 154 IPR012677 -
Lele04g1623 437 CDD RRM2_DAZAP1 67 146 IPR034131 GO:0003723
Lele04g1623 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Lele04g1623 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 129 IPR000504 GO:0003723
Lele04g1623 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Lele04g1623 437 SMART rrm1_1 70 142 IPR000504 GO:0003723
Lele04g1623 437 MobiDBLite consensus disorder prediction 388 437 - -
Lele04g1623 437 MobiDBLite consensus disorder prediction 416 437 - -
Lele04g1623 437 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 428 - -
Lele04g1623 437 SUPERFAMILY RNA-binding domain, RBD 1 67 IPR035979 GO:0003676
Lele04g1623 437 MobiDBLite consensus disorder prediction 388 402 - -
Lele04g1623 437 SUPERFAMILY RNA-binding domain, RBD 68 229 IPR035979 GO:0003676
Lele04g1623 437 FunFam Heterogeneous nuclear ribonucleoprotein 1 66 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1623 Lele-ChrLele04 21098162 21100609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1623 9 170 Eukaryotic Initiation Factors Gene Family AT2G36660 31.034 3.76e-10 60.1