LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g1617	ATGGACGCCGCTATCAACTCCGCCGATGCCCGCTCCGGTTCCGACTTCCGGCTCCGACCGGTCTCTTCCTCTGATTCAGCTCAATTCGTCGTTTCCCGAGGTGCAAGGTACAAGCTCATGTCCCCTGCTAGTCTTCCGATCTCTAGGTCGCCTTGTATCACGATTCCGCCTGGCCTCAGTCCGTCGTCGTTTCTTGAGTCCCCGGTCCTTCTCTCCAACGTCAAGGTGGAGCCTTCACCAACTACTGGGTCCCTTACTAAACCCATGTCTGTTCAGGAATCTGTTTCGTCTGCTACCTATCCTGTATCCACTGTACGCTTTGAAACCAATACTGTTGATGACAAAATATCTGGCTTCTTTGAGTTTAACTCAAACAATAGATCGAATATGGCTCCCACAGATTTGAACAGCCATGTAAACGAACTATCTATGCAAATACAAGGTTCAAGCCAAGCTCAAGCTTCTGCTTCATCTCCATTAGTGAAAAGTGAGATGGTAATGCCGTCAGATGAATTAAGTTTATCATCACCTGTTCAAATGGTTTGTTCAGGGGCTAGTGCTCCTGTTCAAGCCGATATGGATGGGTCTAATCCCAGAGGCAATGTAGTAAATGTGCTTCAAGCTTCACAAGTTGAAGTTAGAGGCAGTGGTGTCTCAGTTGCTGCCGAGAGAACGTCTGATGATGGATATAATTGGCGGAAATATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGCTGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAATTTACAAGGGATCACATGATCATCCTAAACCTCAACCAAGTCGCAGATACTCTACTGGTACTAGTATGTCTATGCATGAGGAGAGATTTGAGAAGCCTTCATCTTTGTCCTGCCAAGATGTCAATATGTATGGTCAAGAATCTCACGCTACCGAGCCCAACAGTAACCCAGAGTTGTCTGTTGTAGCAGCAAATGATGATGGTCGTGAGGGTGCAGGATTAGCTTCCAATAGGATCAATGATGAGGTTGATGATGACGACCCCTTCTCAAAGCGAAGGAAGGTGGAGAATGGAAATGCTGACATCACTCATATAGTTAAGCCTATTCGAGAACCAAGGGTTGTTGTACAAACTCTAAGTGAAGTTGACATATTGGATGATGGGTATCGCTGGCGAAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTACTACAAATGCACAAATGCCGGTTGCCCTGTTAGAAAACATGTGGAGAGGGCTTCTCATGATCCCAAAGCAGTAATAACCGCTTATGAGGGTAAGCACAATCATGATGTACCTACTGCAAGGAATAGTAGCCATGATACAGCAGGACCAGCAGCTCCTGTTGGACAGACACGAATAAGATCGGAAGAAAGCGATACCATTAGCCTCGACCTTGGGATGGGTATCAGCTCGGCTGCTGAAAATAAATTGAAGGGGCAAGGGCAAATGCTACTCTCTGAATTTGGGAATGGTCAAAGTTATGCCAACAATTCCAATTTCAAGTTTGTTCATAATGCCCCAGCTCCAGCATACTTTGGTCTTCTAAACAATGGCTCAAATCCATTCGGATCTTCTAGAGAACCCCCATCTTTGAACCATACCACATATCGGTGCCCGCAGCCGCAGGGCATGGGAAGAATACTAACAGGTCCATGA	1737	0.4588	MDAAINSADARSGSDFRLRPVSSSDSAQFVVSRGARYKLMSPASLPISRSPCITIPPGLSPSSFLESPVLLSNVKVEPSPTTGSLTKPMSVQESVSSATYPVSTVRFETNTVDDKISGFFEFNSNNRSNMAPTDLNSHVNELSMQIQGSSQAQASASSPLVKSEMVMPSDELSLSSPVQMVCSGASAPVQADMDGSNPRGNVVNVLQASQVEVRGSGVSVAAERTSDDGYNWRKYGQKHVKGSEFPRCYYKCTHPNCEVKKLFERSHDGQITEIIYKGSHDHPKPQPSRRYSTGTSMSMHEERFEKPSSLSCQDVNMYGQESHATEPNSNPELSVVAANDDGREGAGLASNRINDEVDDDDPFSKRRKVENGNADITHIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITAYEGKHNHDVPTARNSSHDTAGPAAPVGQTRIRSEESDTISLDLGMGISSAAENKLKGQGQMLLSEFGNGQSYANNSNFKFVHNAPAPAYFGLLNNGSNPFGSSREPPSLNHTTYRCPQPQGMGRILTGP	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g1617	578	Pfam	WRKY DNA -binding domain	400	456	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	Pfam	WRKY DNA -binding domain	227	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	SUPERFAMILY	WRKY DNA-binding domain	223	285	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	SUPERFAMILY	WRKY DNA-binding domain	391	459	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	FunFam	WRKY transcription factor 33	386	452	-	-
	Lele04g1617	578	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	66	483	IPR044810	GO:0003700
	Lele04g1617	578	FunFam	WRKY transcription factor	215	286	-	-
	Lele04g1617	578	SMART	WRKY_cls	226	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	SMART	WRKY_cls	399	458	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	MobiDBLite	consensus disorder prediction	342	362	-	-
	Lele04g1617	578	MobiDBLite	consensus disorder prediction	456	480	-	-
	Lele04g1617	578	MobiDBLite	consensus disorder prediction	275	310	-	-
	Lele04g1617	578	ProSiteProfiles	WRKY domain profile.	394	459	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	Gene3D	WRKY domain	217	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	Gene3D	WRKY domain	384	460	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g1617	578	ProSiteProfiles	WRKY domain profile.	221	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g1617	Lele-ChrLele04	21059304	21063355	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g1617	40	578	WRKY Transcription Factor Family	AT4G26640	55.676	0.0	524

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele04g1617		WRKY	4.9e-25	CL0274