Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1596 ATGGCGGACTCGGATAACGATTCCGGAGGGGCGCAGAACGCGGGAGCCCATGCAAACAGCAGTGAATTCTCGCCGAGAGAGCAGGACCGGTTCCTACCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTTCCGGCGAATGCGAAGATCTCGAAGGACGCGAAGGAGACAGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACTGGAGAGGCCTCCGATAAGTGCCAAAGGGAGAAGCGGAAGACCATCAACGGGGACGACTTACTCTGGGCGATGACCACGCTAGGATTCGAGGACTACGTGGAGCCACTCAAGATTTACTTGCAGAGGTTCAGGGAAATGGAGGGAGAGAAGAGCGTGGTAGCGGCGCGTGACAAGGAAGGAGGGGGCGCATCGAATAGTGCGTATGACGGCGGGGGCGGGGTGTACGGGGGCAGCGGGGGTGGAATGGGAATGATGATGCATCAAGGACACGTGTACGGCTCTGGTGGGTTTCATCAAATGGGTGTAAGTGGTGGTCCTGTGATGGGTAAGAGCGGGCCAACTTATCCGGGTCCTGGATCTAATACGGGTAGACCAAGATAG 594 0.569 MADSDNDSGGAQNAGAHANSSEFSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVVAARDKEGGGASNSAYDGGGGVYGGSGGGMGMMMHQGHVYGSGGFHQMGVSGGPVMGKSGPTYPGPGSNTGRPR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1596 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele04g1596 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele04g1596 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele04g1596 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele04g1596 197 SUPERFAMILY Histone-fold 28 130 IPR009072 GO:0046982
Lele04g1596 197 MobiDBLite consensus disorder prediction 173 197 - -
Lele04g1596 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele04g1596 197 FunFam Nuclear transcription factor Y subunit B-3 20 141 - -
Lele04g1596 197 MobiDBLite consensus disorder prediction 1 28 - -
Lele04g1596 197 Gene3D Histone, subunit A 18 140 IPR009072 GO:0046982
Lele04g1596 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele04g1596 197 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1596 Lele-ChrLele04 20878702 20879295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1596 1 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.576 1.16e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele04g1596 CBFD_NFYB_HMF 1.8e-27 CL0012