Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1595 ATGGATGAAGGTGAGGGAGGGTACGGCGAGAGTGGGGATCCAATGGATCAGTTCCATCGCAACGAAGCGATATCAGCTGTAGCTGATGATGGTTTTTTGGCCGAGGAGGACGACGATTACGAGGACCTTTACAACGACGTTAATGTTGGGGAAGGGTTTCTTCAGTCTTTAAGAAAGAACGAGGATTCCGGATTTCGGAATGAGGAGGCTGAGGAGAAGAAGACTCAATCAGCCGCCGTGCCACCGGAAACTGGCGGCGTTTCTATCCCAGGTGTCGGTGTCGGTGGTGGTAGTAGTACGGGTGGTGAGGTGGCTGCCGCTGCGGGGGTTATGGATGCTGCGTCTAGGGTTCCAGGGCGAGCAGATGGGATTCAAAATCAAGGTTTTAGAGGGAATGAGATGGGTTTGAAAGTTAGTGGTGGATCGGGTGCCTCTATGGGTGGTGGAGGAGGGATGAGGGTTGAATTAGGGCAACAACCGGGCAAGTTGAATGAGATAGAGGAGCAGAGTGCTAATAACAGTGTAGTAGTACAAGGCATGAGGCAGCAACCTCATGGTGGAGTTGTTGGGAATGTGGGAAATGAGCATTTGATGAGGCAAGGTGGAGGAGGAGGAAACCTCAATAGAGCTGGTGGCAATGGGGTTGGGAATAATGCGAGTGTTGTCAATGTTGTCAATACTGGAGGAGGAGCTGCTGCTATTCCAGGTGGTGGTGCTGGAGGTGGTGGTGGTGGTGGGGGCACCATTTTATTTGTTGGTGATTTACACTGGTGGACTACTGATGCTGAGTTGGAGGCAGAGCTTTGTAAGTATGGGCCAGTGAAGGAAGTGAAATTTTTTGATGAGAAGGCTAGTGGGAAGTCAAAAGGGTATTGCCAGGTTGAGTTTTATGATCCCTCTGCTGCATCTGCTTGTAAAGAAGGAATGCATGGGTATATGTTTAATGGGCGACCATGCGTTGTTGCTTTTGCTTCTCCTTTTTCCGTTAAGAGAATGGGAGAGGCTCAGGTGAGCAGAAATCAACAGATGGCCCAATCTGCTGCTTCTCAGACAAGGAGAGGACCTGTTGATTCAGGAGTTAAGACAGGTGGGAGTAACATTACTACTGGTGGAAACTACCAAGGTGGAGATGGCAACCGAGGCTATGGGAGAGGTAACTGGGGGAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAACAGGGGTGTTGGGATGGGGGGTAGAGGCATCATGGGTAATGGTGGGAATGGATTTGGACAAGGTATTGGTGCCACCCCACCTCTGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGGCCTATGGGTAGAATGGGTGGCTATGGGGGCTTTCCAGGTGCTCCAACTCCTCCGTTCTCTGGCATTCTGCCGTCGTTTCCTGCAGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTCGGAAGAGGGATGCCCATGAATGGTATGGGAATGATGCCTACTTCAACAGTTGATGGGCCTAATATGGGAATGTGGTCAGATCCAAGTATGGGTGGATGGGGCGGTGAAGAGCATGGTGGTGGGAGGGCTGGAGAGTCGAGTTATGGTGAGGAAACTGCATCAGAACACCAGTATGGTGAGGTGAGTCATGATAGAGGAGGTTGGCCAAATTCCATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCTGGCTCTTCTGAACGAAGGTACAAGGATGATAGAGAACAAGGATATGAGAGAGATGCACCTAGAGAAAAAGACATGGGGCAGGACCATGAATGGTCTGAAAGAAAACATCGTGATGATAGAGAAGTAGGTCGTGAGCGTGATAGGGAGCGTGACCGTGATCGTGAACGGTCTCGAGACCGAGACCGTGACCGTGAAAGGGATCGTGAAAGAGACCGTGAACGTGATAGGTACAAGGAAGAAAGGGACAGATATGCTGACCATCATAGGTACAGAGATCGTGAAGCAGACCACGAGGATGAGTGGGAACGGGGACGGTCATCAAGGACTCACAGCAAATCAAGATTATCACAAGAGGAAGATCATCATTCTAGATCTAGGGATGCTGATTATGGAAAGAGGAGACGTCTTACACCTGAGTAA 2163 0.4998 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEEAEEKKTQSAAVPPETGGVSIPGVGVGGGSSTGGEVAAAAGVMDAASRVPGRADGIQNQGFRGNEMGLKVSGGSGASMGGGGGMRVELGQQPGKLNEIEEQSANNSVVVQGMRQQPHGGVVGNVGNEHLMRQGGGGGNLNRAGGNGVGNNASVVNVVNTGGGAAAIPGGGAGGGGGGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASACKEGMHGYMFNGRPCVVAFASPFSVKRMGEAQVSRNQQMAQSAASQTRRGPVDSGVKTGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGVGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNQGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILPSFPAVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSTVDGPNMGMWSDPSMGGWGGEEHGGGRAGESSYGEETASEHQYGEVSHDRGGWPNSMREKDRGSERDWSGSSERRYKDDREQGYERDAPREKDMGQDHEWSERKHRDDREVGRERDRERDRDRERSRDRDRDRERDRERDRERDRYKEERDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLSQEEDHHSRSRDADYGKRRRLTPE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1595 720 CDD RRM_CFIm68_CFIm59 250 323 - -
Lele04g1595 720 Gene3D - 243 335 IPR012677 -
Lele04g1595 720 MobiDBLite consensus disorder prediction 340 375 - -
Lele04g1595 720 SUPERFAMILY RNA-binding domain, RBD 247 337 IPR035979 GO:0003676
Lele04g1595 720 MobiDBLite consensus disorder prediction 1 23 - -
Lele04g1595 720 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 319 IPR000504 GO:0003723
Lele04g1595 720 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 326 IPR000504 GO:0003723
Lele04g1595 720 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 659 IPR034772 -
Lele04g1595 720 SMART rrm1_1 249 322 IPR000504 GO:0003723
Lele04g1595 720 MobiDBLite consensus disorder prediction 553 720 - -
Lele04g1595 720 MobiDBLite consensus disorder prediction 340 383 - -
Lele04g1595 720 MobiDBLite consensus disorder prediction 61 76 - -
Lele04g1595 720 MobiDBLite consensus disorder prediction 55 101 - -
Lele04g1595 720 MobiDBLite consensus disorder prediction 515 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1595 Lele-ChrLele04 20871645 20873807 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1595 04 20871645 20873807 Lele04g1595 04 20871645 20873807 ECH
Lele01g1334 01 8169530 8171659 Lele04g1595 04 20871645 20873807 hybridization
Lele02g1605 02 19988851 19991016 Lele04g1595 04 20871645 20873807 hybridization