Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1560 ATGCCTGCAAGCTTAAGAAATCCCTCACTTCTCTCAATAAACTCTCTTCTCTTCTCCTTCTCCTTCTTCTTCTCATGCTGCTACTCCATTGATGAACAAGGCCAAGCTCTTCTTGCATGGAAGAACAGTTTGAACAGTACAGGAGATGCAGTATTAGCATCTTGGAGTGCTTCAGATTCAAGCCCTTGCAAATGGGATGGTGTTCTCTGCAACTCCAGAGGAGATGTGGAGGAGATAAGCTTGAAATCTGTGGGCCTGAGAGGCTCATTGCCTTCAAATTTTCAAGCTTTCAAGTCTTTGAAGGTTCTTGTGCTGTCATCAACCAACCTCACAGGTTCTATCCCAAGAGAAATTGGAGGCTGTGAGGAGCTTGTTTCTATTGATCTCAGTGGGAATTCTCTCTCAGGTGAAATACCAGAAGATATTTGCAGGCTGAGTAAACTTGAAAGTTTGTCTCTCCATGCAAACTTTCTTGAAGGTAATATTCCTTCCAACATTGGGAATCTCTCTAGTCTTGTGAATTTGACACTCTATGACAACAAGCTCAGTGGTGAAATCCCAAAGAGTTTGGGATTTTTAAGAAGGCTTCAAGTTTTGAGAGCAGGTGGGAATAAGAACCTTAAAGGTGAGCTGCCATGGGAGATTGGAAACTGCACCAGCTTGGTCATGTTGGGTCTTGCAGAAACCAGCATTTCTGGGAGCCTTCCTTCTTCAATAGGAATATTGAATAACATTCAAACAATTGCTATTTACACAACTCTCCTCTCAGGCTCAATTCCGGATGAGATTGGGAATTGCAGTGAGCTGCAGAATTTGTACCTGTATCAGAATTCTCTTTCAGGTCCAATCCCAAGTCAACTTGCAAATCTCAGAAAGCTTCAGAGTATTCTCTTATGGCAGAACAATCTAGTTGGGACAATCCCAGAAGAGCTTGGAAGCTGCACAGAGCTCAAAGTCATAGACTTTTCAGAAAACCTCCTCACTGGAACCATACCAATGAGCTTTGGGAAGCTTTCAAATATTGAAGAAATCCAGCTAAGTGTTAATCAGTTGACAGGTATTATACCTCCTGAGATTACCAATTGTACTTCTCTGACTCAGTTGGAAGTTGACAACAATGCTCTTTCTGGAGAGATTCCTTCTCTTATAGGCAACTTGAAAAGCTTGAATCTTTTCTTTGCATGGCAGAACAAGCTCACTGGGAAAATCCCAGATAGTCTCTCTGAGTGCCAAGATCTTGAGGGACTTGATCTCTCTTACAACAATCTGATTGGTTCAATACCAAAATCACTTTTTGGGTTGAGGAATCTCACTAAACTCTTGCTTCTTTCCAATGAATTATCAGGCTTTGTTCCTCCTGATATAGGAAACTGCACAAGTCTCTTCAGGTTGAGGTTGAACAGAAATAGATTTTATGGGTTCATTCCACCTGAGATAGGAAACTTGAAGAACCTCAACTTCATGGATATGAGCAGCAATCACTTTGTGGGGCAGATGCCTTCATCATTATCTGGATGCGAGAATCTTGAGTTTATTGACTTTCATTCAAATTCTCTCACTGGTTCAATCCCAGAAGCTCTCCCCAGAAGTCTTCGATTCATGGATTTCTCAGATAACAGGTTCACTGGTTCGTTGAGTCGTACCATTGGTTCATTAAGTGAACTAACCAAACTCAATCTGGGGAAGAATCAACTCAGTGGGCAAATCCCAGAAGAGATCTCATCTTGTTCTAAGCTTCAACTTCTTGACCTGGGAAGCAATGATTTCTCTGGAGAAATTCCAGAGCAATTAGGTCAAATCCCGTCGTTGGAAATCTCTTTAAATCTCAGCTTCAATCAGTTTTCTGGCCAAATCCCATCTCAAATCTCTGGTCTTACCAAACTGGGTGTTCTTGATATCTCCCACAACAACCTCTCAGGGAATCTAAACTCTCTCTCTGACCTTCAAAACCTCGTTTACTTAAACGTTTCATTCAACTACTTCTCTGGTGAATTACCCGACACCCCATTTTTCAAAAAGCTGCCTTTAAGTGACCTCACCCCAAATAAAGGCCTCTATATCGCCGGTGGTGACGGTTTGACTCCGGTTGACGGAGTGGGACCCAGTAAAGTCCATGCCAGATCAGCAATGAAGTTCATCATGTCCATTCTCTTAAGCATAAGTGCAGTACTTGTACTACTCACAATCTATGCTTTGGTACGTTGTCATATTCAAAACAGAGCAATCATGGAAGATAGCTCATGGGAGATGACTTTTTATCAGAAGCTCGTAATCTCCTCCATTGATGATGTCATCAAGAGCCTGACGTCATCCAACGTGATCGGCACCGGAAGCTCCGGCGTGGTGTACAGGGTAACAATCCCCAACAACAGCTCCATCGGCGAACTAGCCGTTAAAAAGATGTGGTCTTCAGAAGAATTCGGAGCATTCGAATCCGAGATTCGAACCCTGGGTTCAATCCGACACAAGAACATCGTCAGACTCCTAGGTTGGGGATCCAACAAGAACATCAAGCTCCTCTTCTACGACTACCTCCCCAACGGCAGCCTCAGCTCGATGATCCACGGTTCCGGCAAAGGATGTGCAGATTGGGAAACAAGGTACGAAGTTGTAGTGGGTGTATCTCACGCGCTGGCTTATTTACACCACGATTGCGTCCCTCCAATTCTCCACGGAGACGTCAAGGCCATGAACGTGTTACTTGACGACAGGTTTCAAGCTTATCTCGCAGATTTCGGCTTAGCGAGAATCGTTCATGAAAAAGACGACACTCATCATCATTCTGATCATAAACCACTTCATAAAACTTATCTGGCTGGTTCTTACGGTTACATGGCTCCAGAACATGCATCGATGCAGAGGATCACAGAGAAGAGTGACGTGTATAGTTATGGAGTGATTCTGTTGGAGGTGTTGACTGGGAGGCACCCACTGGACCCTAGTTTGCCGGGTGGTGCACACATGGTTCAGTGGGTTCGGAACCACTTAGACAATAAAGGGGACCCATCTGATATTTTGGACCCAAAGCTGAGAGGGAGGGCTGAACCAGCCATGCATGAGATGCTTCAGACTTTGGCTGTGTCGTTTCTGTGTGTGAGCACTAAGCCTGAGGATCGTCCTACGATGAAGGACGTTGTGGCTATGCTTAAAGAAATCACACCTGTTGATGAGTCCTCAAGGTTGGATTCTGATGAACTGAAGAAGAAGGCTAAATCTTCGTTACATGGCTCGCCTTATCCAGTTCCACCTCCTAAGCGTCTCGTCTCGCATCAGTCTTCTAACTGTTCCTTTCATTTCTCAGATGACTCAGTCTAA 3315 0.441 MPASLRNPSLLSINSLLFSFSFFFSCCYSIDEQGQALLAWKNSLNSTGDAVLASWSASDSSPCKWDGVLCNSRGDVEEISLKSVGLRGSLPSNFQAFKSLKVLVLSSTNLTGSIPREIGGCEELVSIDLSGNSLSGEIPEDICRLSKLESLSLHANFLEGNIPSNIGNLSSLVNLTLYDNKLSGEIPKSLGFLRRLQVLRAGGNKNLKGELPWEIGNCTSLVMLGLAETSISGSLPSSIGILNNIQTIAIYTTLLSGSIPDEIGNCSELQNLYLYQNSLSGPIPSQLANLRKLQSILLWQNNLVGTIPEELGSCTELKVIDFSENLLTGTIPMSFGKLSNIEEIQLSVNQLTGIIPPEITNCTSLTQLEVDNNALSGEIPSLIGNLKSLNLFFAWQNKLTGKIPDSLSECQDLEGLDLSYNNLIGSIPKSLFGLRNLTKLLLLSNELSGFVPPDIGNCTSLFRLRLNRNRFYGFIPPEIGNLKNLNFMDMSSNHFVGQMPSSLSGCENLEFIDFHSNSLTGSIPEALPRSLRFMDFSDNRFTGSLSRTIGSLSELTKLNLGKNQLSGQIPEEISSCSKLQLLDLGSNDFSGEIPEQLGQIPSLEISLNLSFNQFSGQIPSQISGLTKLGVLDISHNNLSGNLNSLSDLQNLVYLNVSFNYFSGELPDTPFFKKLPLSDLTPNKGLYIAGGDGLTPVDGVGPSKVHARSAMKFIMSILLSISAVLVLLTIYALVRCHIQNRAIMEDSSWEMTFYQKLVISSIDDVIKSLTSSNVIGTGSSGVVYRVTIPNNSSIGELAVKKMWSSEEFGAFESEIRTLGSIRHKNIVRLLGWGSNKNIKLLFYDYLPNGSLSSMIHGSGKGCADWETRYEVVVGVSHALAYLHHDCVPPILHGDVKAMNVLLDDRFQAYLADFGLARIVHEKDDTHHHSDHKPLHKTYLAGSYGYMAPEHASMQRITEKSDVYSYGVILLEVLTGRHPLDPSLPGGAHMVQWVRNHLDNKGDPSDILDPKLRGRAEPAMHEMLQTLAVSFLCVSTKPEDRPTMKDVVAMLKEITPVDESSRLDSDELKKKAKSSLHGSPYPVPPPKRLVSHQSSNCSFHFSDDSV 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1560 1104 PANTHER LEUCINE RICH REPEAT KINASE 2 359 1056 - -
Lele04g1560 1104 SMART LRR_sd22_2 552 575 - -
Lele04g1560 1104 SMART LRR_sd22_2 314 343 - -
Lele04g1560 1104 SMART LRR_sd22_2 266 292 - -
Lele04g1560 1104 SMART LRR_sd22_2 625 650 - -
Lele04g1560 1104 SMART LRR_sd22_2 145 171 - -
Lele04g1560 1104 Gene3D Ribonuclease Inhibitor 528 605 IPR032675 -
Lele04g1560 1104 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Lele04g1560 1104 SUPERFAMILY RNI-like 78 400 - -
Lele04g1560 1104 MobiDBLite consensus disorder prediction 1057 1072 - -
Lele04g1560 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Lele04g1560 1104 ProSitePatterns Protein kinases ATP-binding region signature. 774 800 IPR017441 GO:0005524
Lele04g1560 1104 ProSiteProfiles Protein kinase domain profile. 768 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1560 1104 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Lele04g1560 1104 ProSiteProfiles Leucine-rich repeat profile. 627 649 IPR001611 GO:0005515
Lele04g1560 1104 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Lele04g1560 1104 MobiDBLite consensus disorder prediction 1057 1104 - -
Lele04g1560 1104 Gene3D Ribonuclease Inhibitor 606 689 IPR032675 -
Lele04g1560 1104 Gene3D Ribonuclease Inhibitor 427 527 IPR032675 -
Lele04g1560 1104 SMART LRR_typ_2 338 362 IPR003591 -
Lele04g1560 1104 SMART LRR_typ_2 290 314 IPR003591 -
Lele04g1560 1104 SMART LRR_typ_2 552 576 IPR003591 -
Lele04g1560 1104 SMART LRR_typ_2 434 458 IPR003591 -
Lele04g1560 1104 SMART LRR_typ_2 625 648 IPR003591 -
Lele04g1560 1104 SMART LRR_typ_2 97 121 IPR003591 -
Lele04g1560 1104 SMART LRR_typ_2 145 169 IPR003591 -
Lele04g1560 1104 FunFam Leucine-rich receptor-like protein kinase family protein 30 192 - -
Lele04g1560 1104 FunFam Putative LRR receptor-like serine/threonine-protein kinase 606 691 - -
Lele04g1560 1104 Pfam Protein kinase domain 771 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1560 1104 Gene3D Phosphorylase Kinase; domain 1 732 844 - -
Lele04g1560 1104 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 845 1068 - -
Lele04g1560 1104 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 205 330 - -
Lele04g1560 1104 Gene3D Ribonuclease Inhibitor 204 426 IPR032675 -
Lele04g1560 1104 FunFam Leucine-rich receptor-like protein kinase family protein 333 605 - -
Lele04g1560 1104 MobiDBLite consensus disorder prediction 1087 1104 - -
Lele04g1560 1104 Gene3D Transferase(Phosphotransferase) domain 1 845 1074 - -
Lele04g1560 1104 SMART serkin_6 768 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1560 1104 SUPERFAMILY L domain-like 413 669 - -
Lele04g1560 1104 Pfam Leucine rich repeat 316 375 IPR001611 GO:0005515
Lele04g1560 1104 SUPERFAMILY Protein kinase-like (PK-like) 750 1049 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1560 Lele-ChrLele04 20507374 20510779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1560 27 1104 Receptor kinase-like Gene Family AT5G56040 65.804 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele04g1560 Pkinase 1.8e-37 CL0016