Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1558 ATGCTTCTTGTTTTGTCGGTGTTTGATTTGTTGTGTGAAATACTCATTCACGCGGTGCGTGGGACTGGAGGCATTGTGTGGAAAGCATACGTTGGAAGGATTCTCAGTTCTCACGTATCAAATGTAACATATCATCTCAAGGCTGCAGACGTTAGAACCAGGACTTATGTAGTTGTGCTTACATCCCTATTAACCTATAGATCAAACTGGAGAAAAAGTAAATTGTATAATAACTCGGGTTGTTTCCATGGTGAGACAAGGTTCTTTCCAATAAAACATAAATCTCCTATATATCTAATGGAGTCATCCTCTGGGGTTCATTTTTCTGGATTTCACGTGAACGGTTCAGCACAGAGGGATGCTGGCGCAGAGCAACCTACAACTTCAGCTACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGAGCAGCATCCGGGAAGACTACGGTTTGTGATATGATTATTCAGCAGCTTCATGACCAGCGAGTTGTACTTGTTACTCAGGATTCTTTTTATCATAATTTGACTGTAGAGGAACTTACAAGAGTCCAAGATTACAACTTTGACCATCCCGATGCTTTTGATACTGAGGAATTATTACGGGTTATGGACAAGTTAAGACATGGACAAGCTGTAGATATTCCAAACTATGACCCAAAGAGTTACAAGAGTGACGTGTTTCCAGCAAGGAGGGTGAATCCTTCAGATGTTATAATTTTGGAAGGAATTCTTATTTTCCATGATCCACGTGTTCGGGAGCTGATGAATATGAAGATATTTGTCGACACAGATGCTGATGTTCGTTTGGCTAGGAGAATTAGGCGTGATACTTGTGAGAAGGCTCGGGATATTGGCTTCGTGCTTGATCAGTATTCTAAATTTGTAAAGTCGGCTTTTGATGACTTTATTCTTCCAACAAAGAAATATGCTGATATCATCATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATCGTACAGCATATCCGAACAAAGCTTGGTCAACATGATTTGTGTAAAATATATCCCAATTTATATGTCATTCAAACAACTTTTCAGATAAGGGGTATGCACACCCTGATACGTGATTCTCAGACAACGAAACATGATTTTGTGTTTTATGCTGACCGTTTGATTCGTTTGGTTGTTGAACATGGCCTGGGGCATCTTCCATTTACGGAAAAGCAAGTAATAACTCCAACTGAGTCTGTATATACTGGTGTGGACTTTTGCAAGAGGTTATGTGGTGTCTCTGTTATCAGGAGTGGAGAGAGTATGGAAAATGCTTTACGTGCGTGCTGTAAAGGTATCAAGATTGGTAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAGAAGTTGCCCAACGACATCTCAGATAGACATGTGTTACTATTGGATCCTATCCTAGGAACAGGTAATTCTGCTGTTCAAGCAATTTCTTTGCTTCTCAGAAAGGGTGTACCAGAGCCCAACATTATATTTCTCAACCTCATATCAGCACCTCGAGGTGTGCACTTGGTCTGCAAGAAATTTCCAAGAATAAAGATTGTGACATCTGAGATTGATTTTGGTTTGAATGAAGATTTTCGTGTTGTACCTGGCATGGGTGAGTTTGGGGACCGTTATTTTGGAACAGATGATGATGATGACGACCAACAAGTGGTGGCCCCTTCGCAAGAGTGA 1716 0.4068 MLLVLSVFDLLCEILIHAVRGTGGIVWKAYVGRILSSHVSNVTYHLKAADVRTRTYVVVLTSLLTYRSNWRKSKLYNNSGCFHGETRFFPIKHKSPIYLMESSSGVHFSGFHVNGSAQRDAGAEQPTTSATDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVTQDSFYHNLTVEELTRVQDYNFDHPDAFDTEELLRVMDKLRHGQAVDIPNYDPKSYKSDVFPARRVNPSDVIILEGILIFHDPRVRELMNMKIFVDTDADVRLARRIRRDTCEKARDIGFVLDQYSKFVKSAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQTTFQIRGMHTLIRDSQTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTESVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPEPNIIFLNLISAPRGVHLVCKKFPRIKIVTSEIDFGLNEDFRVVPGMGEFGDRYFGTDDDDDDQQVVAPSQE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1558 571 FunFam Uridine kinase 134 340 - -
Lele04g1558 571 PANTHER URIDINE KINASE 127 466 - -
Lele04g1558 571 CDD UMPK 139 337 IPR000764 -
Lele04g1558 571 Pfam Uracil phosphoribosyltransferase 355 556 - -
Lele04g1558 571 PRINTS Uridine kinase signature 305 318 - -
Lele04g1558 571 PRINTS Uridine kinase signature 269 279 - -
Lele04g1558 571 PRINTS Uridine kinase signature 283 294 - -
Lele04g1558 571 PRINTS Uridine kinase signature 212 227 - -
Lele04g1558 571 PRINTS Uridine kinase signature 137 154 - -
Lele04g1558 571 PRINTS Uridine kinase signature 167 178 - -
Lele04g1558 571 FunFam Uridine kinase 341 556 - -
Lele04g1558 571 Gene3D - 133 340 IPR027417 -
Lele04g1558 571 CDD PRTases_typeI 414 529 IPR000836 -
Lele04g1558 571 Gene3D - 341 556 IPR029057 -
Lele04g1558 571 Pfam Phosphoribulokinase / Uridine kinase family 139 325 IPR006083 GO:0005524|GO:0016301
Lele04g1558 571 SUPERFAMILY PRTase-like 340 557 IPR029057 -
Lele04g1558 571 TIGRFAM udk: uridine kinase 136 337 IPR000764 -
Lele04g1558 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1558 Lele-ChrLele04 20494122 20500238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1558 94 559 PRT Gene Family AT4G26510 83.333 0.0 801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1294 01 7883425 7889984 Lele04g1558 04 20494122 20500238 hybridization
Lele02g1566 02 19642873 19649844 Lele04g1558 04 20494122 20500238 hybridization