Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1548 ATGAGCGATTCTGCTTACAGAGTCGAAACCACTTCACGTCTCGCCCAATGGAGAATCGAAAACCCTGCCTCCTGCACTTACCGCAAATCTGATCCTTTTAGGATCGGCAAGTGGAATTGGCATTTGGCCGTGGAGAAGAACAGGGTTTTATTTATAAAATTATATCCAGAAATATCGAATCTAACCAGAGACAACCCCCCGATTGCATCTTTCATCATTCGGGTCGTTAGTTCTGCTGGGGATCGCAAGGCCTTGACCCATCCAGTAGTAAAAGACAGATTGATCAAGAACAGCGAAGACTTTGTTTGGGCACTTGAGGTTCCAGTAACTGGGAAATTCTTTATTGACGTCGAGTTCCTTGATTTGAAGACTACTTCCTCAAACGGTGGAGAACCTTGCTCCATCTGGGCGGAAGGACTTACACCTAAGGCGTCTCATGCGACGGCTCTTGAAGCTCTTGGTCGGATGCTTACTGAAGGAATCCACACAGACATAGTGATCAATGCATCTGATGGAAGCATTGGAGCTCATCGCGCTGTTCTTGCAGCTCGATCTCCTGTCTTTCGCAGCATGTTCTCGCATAACCTTAAGGAGAAGGAGCTATCAACCATAAACATTGAAGACATGTCTATTGATGCTTGCCAAGCATTCCTCAATTATCTTTATGGTAGCATAGGAACTGAAGAATTTCTCACATACAGGCTTGTCCTTCTTCATGCTGCTGACAAGTATGACATATCTGACCTGAAAGAGGCATGCCATGAAAGCCTTGTAGAAGACATTGATACCAAAAATGTTCTTGAGAGGCTTCAAAATGCATACCTGTACCAATTACCAAAACTGAAGAGTAGCTGTTTACGATATCTAGTAAAATTCGGGAAAATATTCGACATCCGCGATGATTTCAACTCCTTCATGCAGTGTGCAGATAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTCAATGCCTGGAGAGGGTTCTGA 987 0.4428 MSDSAYRVETTSRLAQWRIENPASCTYRKSDPFRIGKWNWHLAVEKNRVLFIKLYPEISNLTRDNPPIASFIIRVVSSAGDRKALTHPVVKDRLIKNSEDFVWALEVPVTGKFFIDVEFLDLKTTSSNGGEPCSIWAEGLTPKASHATALEALGRMLTEGIHTDIVINASDGSIGAHRAVLAARSPVFRSMFSHNLKEKELSTINIEDMSIDACQAFLNYLYGSIGTEEFLTYRLVLLHAADKYDISDLKEACHESLVEDIDTKNVLERLQNAYLYQLPKLKSSCLRYLVKFGKIFDIRDDFNSFMQCADRDLIAEVFHEVLNAWRGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1548 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Lele04g1548 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Lele04g1548 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Lele04g1548 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Lele04g1548 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Lele04g1548 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Lele04g1548 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1548 Lele-ChrLele04 20445900 20447700 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele04g1548 BTB 9.3e-24 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1548 04 20445900 20447700 Lele04g1548 04 20445900 20447700 ECH
Lele01g1288 01 7844286 7846344 Lele04g1548 04 20445900 20447700 hybridization
Lele02g1559 02 19596496 19598266 Lele04g1548 04 20445900 20447700 hybridization