Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1545 ATGAGGATCACTGTAATGACTGCCGATGAACAAATTCTTACGTTGGATGTGGATCCCCATGAATCTGTGGAAAACGTCAAAGCGTTGCTTGAGGTAGAGACACACGTTCCTCTTCAGCAACAGCAACTTCTCTATAACGGAAGGGAGATGAGTAATCCTGAGAAATTGAGTGCTCTCGGTGTCAAAGATGACGATTTGGTGATGATGGTCTCTGCTGCTGCTCCTTCTGGTGCATCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAATCCTGCTGCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATAGGTCAGCTCTTTCAGAATGATCCAGAGTTGGCACAAGCTATTCTAGGGAGTGATCTTAACAGAATACAGGAGATTTTACGAATGCGTCATCAACAGAGAGCGGAATTACAGCGTCAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAGGAAGATTGAAGCTGCTATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCTCTAGAACATAATCCCGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACAATCATATCAAAAAGCTGTGCTGAACGCTGTGGATTGTTAAGACTTCTGGATCAGCGTTACAAGGGGATCGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGAATCCATGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCGTTCTTAGTGCTCGATTCTCCTAACATGGAGTTCCTTTTCGGGCTGGATATGCTCCGAAAGCACCAGTGCATTATAGATTTAAAAGAAAATGTGTTGCGAGTCGGTGGAGGGGAAGTTTCTGTGCCATTCTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGTACGCTAAGGAAGCATTCAGCTCAGGCGCCCCTGTAACTGCAACAGGAACAACAGATAGGAGTGGTAGTGCACCGAAAGGAGGCCAGTCTTCAGGAGGAACTTCTGGAGGCACTTCTCAGGAGAGTGAATTTGAAGCAAAAGTTGCGAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTGGTACAAGCTCTTAAATTGTTCAATGGCAATGAGGATCAGGCTGCTGGGTTTCTGTTTGGGGGTTTCTAG 1239 0.4504 MRITVMTADEQILTLDVDPHESVENVKALLEVETHVPLQQQQLLYNGREMSNPEKLSALGVKDDDLVMMVSAAAPSGASANDLGFNPDGSAVNPAAFQQHIRQDSNLIGQLFQNDPELAQAILGSDLNRIQEILRMRHQQRAELQRQKEEELALLYADPFDVEAQRKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEERYAKEAFSSGAPVTATGTTDRSGSAPKGGQSSGGTSGGTSQESEFEAKVAKLVELGFGREAVVQALKLFNGNEDQAAGFLFGGF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1545 412 Pfam UBA/TS-N domain 374 407 IPR015940 -
Lele04g1545 412 Gene3D - 345 411 - -
Lele04g1545 412 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Lele04g1545 412 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Lele04g1545 412 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Lele04g1545 412 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 408 - -
Lele04g1545 412 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Lele04g1545 412 Coils Coil 130 150 - -
Lele04g1545 412 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Lele04g1545 412 MobiDBLite consensus disorder prediction 336 370 - -
Lele04g1545 412 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lele04g1545 412 MobiDBLite consensus disorder prediction 339 370 - -
Lele04g1545 412 CDD UBA_scDdi1_like 374 409 - -
Lele04g1545 412 FunFam DNA damage inducible 1 homolog 2 175 322 - -
Lele04g1545 412 Gene3D - 1 82 - -
Lele04g1545 412 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Lele04g1545 412 SUPERFAMILY UBA-like 364 411 IPR009060 GO:0005515
Lele04g1545 412 Gene3D Acid Proteases 176 322 IPR021109 -
Lele04g1545 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 368 411 IPR015940 -
Lele04g1545 412 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele04g1545 412 SMART uba_6 373 410 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1545 Lele-ChrLele04 20425151 20430763 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1545 04 20425151 20430763 Lele04g1545 04 20425151 20430763 ECH
Lele01g1285 01 7824161 7830163 Lele04g1545 04 20425151 20430763 hybridization
Lele02g1556 02 19575276 19581112 Lele04g1545 04 20425151 20430763 hybridization