Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1544 ATGGCTGGAACCCTAAATTTTACGCTCCCCGCCGTCAGCCCTCTCCGTCCCTTCTCTTCCAACGGCGTTGCCACTTCTTCCGTCAGGTTTCTCCCGCATCAATGTAAGGCTTCGATGCGGTCTTTTGCGACCGAGGCCGGATCTGCGGCGGTTGCGTCTCGGCGGCCTGCGAGCCTCTACGAGGTGCTTCGAGTAGGCCAGAACGCTTCACCGAGGGAGATTAAATCGGCTTACCGGAGTTTGGCTAAGATCTACCATCCTGATTCGGCGATGCACCGATCGGAGTCTGACTACGATCAAGACTTCATCGAGATCCACAACGCCTACGCCACGCTCTCCGATCCTTCGGCCAGAGCGATATATGATCTTTCTTTGATGGCTGTCCGTGGGAGGAGATCCCCGGTGTCGGCATCTTCGATTCAGAATTCCTCTTCCGGATTTTATACGGCCCGCAGATGGGAGACGGATCAATGTTGGTAG 480 0.5583 MAGTLNFTLPAVSPLRPFSSNGVATSSVRFLPHQCKASMRSFATEAGSAAVASRRPASLYEVLRVGQNASPREIKSAYRSLAKIYHPDSAMHRSESDYDQDFIEIHNAYATLSDPSARAIYDLSLMAVRGRRSPVSASSIQNSSSGFYTARRWETDQCW 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1544 159 ProSitePatterns Nt-dnaJ domain signature. 102 121 IPR018253 -
Lele04g1544 159 SUPERFAMILY Chaperone J-domain 58 143 IPR036869 -
Lele04g1544 159 CDD DnaJ 60 114 IPR001623 -
Lele04g1544 159 Gene3D DnaJ domain 43 143 IPR036869 -
Lele04g1544 159 Pfam DnaJ domain 59 122 IPR001623 -
Lele04g1544 159 ProSiteProfiles dnaJ domain profile. 58 125 IPR001623 -
Lele04g1544 159 SMART dnaj_3 57 117 IPR001623 -
Lele04g1544 159 PRINTS DnaJ domain signature 97 117 IPR001623 -
Lele04g1544 159 PRINTS DnaJ domain signature 78 93 IPR001623 -
Lele04g1544 159 PRINTS DnaJ domain signature 60 78 IPR001623 -
Lele04g1544 159 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 21 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1544 Lele-ChrLele04 20414858 20415337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1544 60 122 C2H2 Transcription Factor Family AT1G74250 46.970 2.42e-10 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1544 04 20414858 20415337 Lele25g1420 25 10307304 10310737 CCT
Lele04g1544 04 20414858 20415337 Lele26g1448 26 10214712 10219788 CCT
Lele04g1544 04 20414858 20415337 Lele27g0667 27 14636736 14650022 CCT
Lele04g1544 04 20414858 20415337 Lele28g1433 28 10411931 10424195 CCT
Lele04g1544 04 20414858 20415337 Lele04g1544 04 20414858 20415337 ECH
Lele01g1283 01 7814677 7815156 Lele04g1544 04 20414858 20415337 hybridization
Lele02g1555 02 19562744 19563223 Lele04g1544 04 20414858 20415337 hybridization