Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1539 ATGGGTCGTCTTCCTTGCTGCGAGAAGGGCAACGTTAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTCTCCTCCTACATTGCTCAACATGGTACCAGGAATTGGCGCCTCATTCCTAAGAATGCTGGTTTGTACTCCTGTCTTGTCTCTAGCATAATGCCTTGCCTCCAGAGGTGTGGGAAGAGCTGCAGGTTAAGGTGGACTAACTACCTTCGTCCTGATCTAAAGCATGGTCAGTTTTCAGACGCGGAAGAGCAAACCATTGTGAAACTTCACTCTGTTTTTGGTAACCGGTGGTCACTAATAGCGGCTCAGCTGCCGGGACGCACCGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAGAAGAAACTTTCAGGCATGGGGATTGACCCGGTCACCCACAAGCCATTCTCCCACCTCATGGCTGAGATCGCGACGACATTGGCACCCCCACAGGCAGCTCACCTGGCTGAAGCAGCTCTGGGCTGCTTCAAAGATGAGGTGCTTCATCTTCTTACTAAGAAGAAGATTAACTTCCAGGCTACGCCACACCACCCCACTGAACAAATAGGGAATAACATTACCTCTTTCATCAACTATAATAAACCTGATGAGAAGGAAGACACTTCTGAGAAGATTAAGTTTGGGTTATCAAAGGCCATGCAAGAACCTGAAACCTCAAATAAACCTTGGGACTGCACTGCAGCTACAACTGTTAGTTTTGAAGGGGCTTGCAGTGTCTTCCCTACAGTGACTGGGGTTCAATTTAGTCCGGTGTCGTTCGCCAATGAAGGGGACGGATCTCCGTGGAGCCGAAGCGTGTGTACCGGAAGTACATGCACAGCCATGGATCATCAACAAGGCCAATTACATGAAAAACTTCAGGAAGAAAATGGAGATGATTCTAATACTGCAAAAGAAATTAGAAGTGGATCCAATTTATTCAATGCGCAGTGCGTGTTGTGGGATTTACCAGCAGAAGATCTAATTAATCCCATGGTATAA 1017 0.472 MGRLPCCEKGNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLYSCLVSSIMPCLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKKINFQATPHHPTEQIGNNITSFINYNKPDEKEDTSEKIKFGLSKAMQEPETSNKPWDCTAATTVSFEGACSVFPTVTGVQFSPVSFANEGDGSPWSRSVCTGSTCTAMDHQQGQLHEKLQEENGDDSNTAKEIRSGSNLFNAQCVLWDLPAEDLINPMV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1539 338 CDD SANT 17 73 IPR001005 -
Lele04g1539 338 Gene3D - 80 140 - -
Lele04g1539 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Lele04g1539 338 FunFam MYB-related transcription factor 13 78 - -
Lele04g1539 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 73 IPR017930 -
Lele04g1539 338 CDD SANT 82 124 IPR001005 -
Lele04g1539 338 FunFam transcription factor MYB80 81 141 - -
Lele04g1539 338 PANTHER F14D16.11-RELATED 1 334 - -
Lele04g1539 338 SMART sant 13 75 IPR001005 -
Lele04g1539 338 SMART sant 78 126 IPR001005 -
Lele04g1539 338 Gene3D - 14 78 - -
Lele04g1539 338 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Lele04g1539 338 SUPERFAMILY Homeodomain-like 11 120 IPR009057 -
Lele04g1539 338 Pfam Myb-like DNA-binding domain 14 73 IPR001005 -
Lele04g1539 338 Pfam Myb-like DNA-binding domain 80 122 IPR001005 -
Lele04g1539 338 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1539 Lele-ChrLele04 20377866 20379376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1539 1 338 MYB Transcription Factor Family AT5G56110 54.519 1.06e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele04g1539 Myb_DNA-binding 1.4e-13 CL0123