Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1532 ATGGCTGGGGCAAATGCATCTAATTCATCCTCACTTGAATGCCCTAATGCTGATTCTGAATCCAATGATGGTCAATCTTTGTCCAATAGTGGTTTGAATGAGGAAGATGATGATGCTACCAAAGAATCACCAGCTGCTGCTCCCAATCAATCAGGAAATTACGTTCAAGAACACCAAGGGATGCAGCATGCTTCATCGTCTGCACCATCCATGCGAGATGAATGCTTTACACAGGCACCGCAGCTCGAACTTGTTGGTCATTCAATTGCATGTGCTTCACATCCTTATCAGGATCCATATTTTGCGGGAATGATGGCGGCTTATGGTCCCCACCAGCTGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAGGAACCTGTTTATGTAAATGCTAAACAATACCCAGCAATTCTTAGGCGCAGGCAGGCTCGTGCGAAGGCAGAGCTTGAAAGGAAGCTAATAAAAGTTAGAAAGCCATACCTTCATGAATCTCGGCATCAGCATGCAATGAGGAGGGCAAGGGGTACTGGAGGTCGCTTTGCAAAGAAAAATGATGGTACTGAGGCCTCAAACCACTTTGGTAAAGAAAAGGATGTGGGATCTGGCCCCGTGGTATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTGTGAGTCTGCTGAAACCTGGAACTCTCCTAATGTGCAACAAGAGGCCAGAGGATATAAGCTTCCTGACCGATATGAAGCACACAACTATGCGGACAATAGTGGCCCTTATCATAATCATAGCGGCCTGCAATCTTCTGCTTATCATTTGCACTCAGGTGAAAGAGTCGATGGAGGGGACTGTTCAGGACAACAATGTGGGAGTATATCTTCCGAACACACTTCACGTAGGCGTCTTGCGATTCAGTAG 936 0.4669 MAGANASNSSSLECPNADSESNDGQSLSNSGLNEEDDDATKESPAAAPNQSGNYVQEHQGMQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYQDPYFAGMMAAYGPHQLGYPPFMGMPQARMPLPLEMAQEPVYVNAKQYPAILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNDGTEASNHFGKEKDVGSGPVVSSQSVSSSGSEPLPCESAETWNSPNVQQEARGYKLPDRYEAHNYADNSGPYHNHSGLQSSAYHLHSGERVDGGDCSGQQCGSISSEHTSRRRLAIQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1532 311 ProSiteProfiles NF-YA/HAP2 family profile. 133 193 IPR001289 GO:0003700|GO:0006355
Lele04g1532 311 MobiDBLite consensus disorder prediction 172 242 - -
Lele04g1532 311 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 135 190 IPR001289 GO:0003700|GO:0006355
Lele04g1532 311 MobiDBLite consensus disorder prediction 1 33 - -
Lele04g1532 311 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 238 IPR001289 GO:0003700|GO:0006355
Lele04g1532 311 PRINTS CCAAT-binding transcription factor subunit B signature 167 190 IPR001289 GO:0003700|GO:0006355
Lele04g1532 311 PRINTS CCAAT-binding transcription factor subunit B signature 136 158 IPR001289 GO:0003700|GO:0006355
Lele04g1532 311 Gene3D - 133 195 - -
Lele04g1532 311 MobiDBLite consensus disorder prediction 292 311 - -
Lele04g1532 311 MobiDBLite consensus disorder prediction 283 311 - -
Lele04g1532 311 SMART cbf3 132 193 IPR001289 GO:0003700|GO:0006355
Lele04g1532 311 MobiDBLite consensus disorder prediction 188 205 - -
Lele04g1532 311 MobiDBLite consensus disorder prediction 44 73 - -
Lele04g1532 311 MobiDBLite consensus disorder prediction 1 73 - -
Lele04g1532 311 MobiDBLite consensus disorder prediction 172 187 - -
Lele04g1532 311 MobiDBLite consensus disorder prediction 212 242 - -
Lele04g1532 311 ProSitePatterns NF-YA/HAP2 subunit signature. 138 158 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1532 Lele-ChrLele04 20337990 20339898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1532 7 238 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.745 9.69e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele04g1532 CBFB_NFYA 3.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1432 25 10530172 10538425 Lele04g1532 04 20337990 20339898 CCT
Lele26g1461 26 10370562 10379590 Lele04g1532 04 20337990 20339898 CCT
Lele27g0650 27 14436877 14445064 Lele04g1532 04 20337990 20339898 CCT
Lele28g1446 28 10617288 10619549 Lele04g1532 04 20337990 20339898 CCT
Lele04g1532 04 20337990 20339898 Lele04g1532 04 20337990 20339898 ECH
Lele03g1288 03 7732177 7734688 Lele04g1532 04 20337990 20339898 ECH
Lele01g1275 01 7758477 7761096 Lele04g1532 04 20337990 20339898 hybridization
Lele02g1544 02 19487811 19489898 Lele04g1532 04 20337990 20339898 hybridization