Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1515 ATGCCAAGATGCCAACTCAGTGACCATGACAACCAGCCACGTCAAATATTCGACATGCCGTCAGTGACCGTCCAACCCGCAAAAGACTATTACACTAACGACGTCCTAACACGATTTTCTTCATCTGCTTCGAAGATGTCCTACTCCAGAAGATCAAGGTATTCTCAATCACCTTTGTACAAGCGATATGGTAGGTCTGTTTCCAGGTCTCTGTCAAGGTCAAGGAGCTTTTCTAGGAGCCCATCAAGAGAAGCAGAGAATCCTGGTAACAACTTGTATGTGACAGGGTTGTCTGCTCGGATTACCAAGAGAGAATTGGAAAAGCATTTTGCAAGCGAGGGAAAAGTGATTGACGTTCACCTGGTTGCTGATCCGTGGACAAGAGAATCGCGAGGGTTTGGGTTTGTGACGATGGAAACTGTTGAGGATGCTGACCGATGTGTAAAGTATCTGGATCGCTCTGTACTAGAAGGGCGTGTCATCACAGTAGAAAAGGCTAGAAGAAGTCGGGGTCGAACCCCAACACCTGGAAGGTATCTTGGGCTAAGGACTGTTCGAGGGCGTCATCACTCTTCAAGCTATTCTCCTCGGCGCTCCCCAAGTTATTCTCCCTACAGAAGAAGCTACAGTCGATCACCATATTCTTCTGATCGCAGTAGGAGTCGCTCTTATTCTCCTTATTATCGCAGTCGACGGAGGTCTTACTCCCCATATTATAGTCGGGATAGATCTTATAGCCCTTATGATCGACGCAGATCCTATTCTCCTTATTATCGACACAGGTCATACTCTCGATCTCGGTCACCAAACAGCAGGTCACCTGTGAGGAGGAGGCGAGATAGATCATACTCTCCTTATGATTCACCTGATGGTGGCTATTACAGAAGGCACCATTACATGTCCATTTCCCCAAGGCCAAGGAGAAGTTCAAGGAGGTATTCCCGCAGTCTCTCCCCGGTGAAGAGGAGGAGCTCAAGAAGGAGCTATTCTCGGAGTCTGTCCCCAAGACCGAGGAGTTCACGAAGAAGGAGCTACTCACCAAGTCCTTCTCCTAGACCAAGGAGGAGTTCACGGAGGAGCTATTCTCGCAGCATTTCTCCTAGATCAAGAGGCAGTAGGAGAGGTGGTTCTTCAAAACGGGGGCGCACACCAGTTAGTGATAGAAGCTACACAAGAAGTCCAAGTATGAGTGCAAGTTCAAGATCAGTATCAAGGTCTCTTACTCCCAGATCAGCATCCCCTTGA 1245 0.4827 MPRCQLSDHDNQPRQIFDMPSVTVQPAKDYYTNDVLTRFSSSASKMSYSRRSRYSQSPLYKRYGRSVSRSLSRSRSFSRSPSREAENPGNNLYVTGLSARITKRELEKHFASEGKVIDVHLVADPWTRESRGFGFVTMETVEDADRCVKYLDRSVLEGRVITVEKARRSRGRTPTPGRYLGLRTVRGRHHSSSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPYYRSRRRSYSPYYSRDRSYSPYDRRRSYSPYYRHRSYSRSRSPNSRSPVRRRRDRSYSPYDSPDGGYYRRHHYMSISPRPRRSSRRYSRSLSPVKRRSSRRSYSRSLSPRPRSSRRRSYSPSPSPRPRRSSRRSYSRSISPRSRGSRRGGSSKRGRTPVSDRSYTRSPSMSASSRSVSRSLTPRSASP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1515 414 CDD RRM_RBMX_like 89 168 - -
Lele04g1515 414 MobiDBLite consensus disorder prediction 194 223 - -
Lele04g1515 414 Gene3D - 37 173 IPR012677 -
Lele04g1515 414 MobiDBLite consensus disorder prediction 65 91 - -
Lele04g1515 414 MobiDBLite consensus disorder prediction 300 329 - -
Lele04g1515 414 SUPERFAMILY RNA-binding domain, RBD 78 193 IPR035979 GO:0003676
Lele04g1515 414 MobiDBLite consensus disorder prediction 330 355 - -
Lele04g1515 414 FunFam Serine/arginine-rich splicing factor SR45a 47 174 - -
Lele04g1515 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 161 IPR000504 GO:0003723
Lele04g1515 414 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 84 297 - -
Lele04g1515 414 SMART rrm1_1 91 164 IPR000504 GO:0003723
Lele04g1515 414 MobiDBLite consensus disorder prediction 166 414 - -
Lele04g1515 414 MobiDBLite consensus disorder prediction 382 414 - -
Lele04g1515 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1515 Lele-ChrLele04 20213264 20216163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1515 91 195 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 1.34e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1515 04 20213264 20216163 Lele04g1515 04 20213264 20216163 ECH
Lele01g1259 01 7637206 7640365 Lele04g1515 04 20213264 20216163 hybridization
Lele02g1528 02 19372237 19376805 Lele04g1515 04 20213264 20216163 hybridization