LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g1513	ATGCTGCCACGTGTCGTCCGCCTCACCGTTGTAGAACTATCTTCTCCTCATGATCCCCATATTGGTTTTGAGATGGAAATGGCGGGGAAGGTGGAGGTCAATGGCGGCGGCGCTTCTTCTGCTTCTGCTGTTTCTGCCAAACTTTCGGCAGTGGCCAACCCATTGGCTGAAAAGCCGGACGAGATTGCGTCCGACATCAATTACCATGCGCAGTATAGCACTCATTTCACCTCTTTCACGTTTGAGCTGGAGCAAGCTTACTTTGCAACTGCTGAGAGTGTTCGCGATCGTCTCATTCGAGTATTGTACTATTTATGGATGTCATAACAACAGATGCACTTCCTACAGGAAAACACGGATACCGATTACTCCTGTGGAATATCTAGATTCTTGATAACAATTCAATGGAATGAAACGTTCGTCCATTTTCACAAAGCTGATCCCAAGCAAACATATTACCTATCGATGGAGTATCTTCAAGGTCGAGCTTTGACTAACGCAGTTGGAAACCTGAATATACAAGAAGCATATGCTGATGCTTTGTGCAAATTTGGACTCAAACTTGAAGAAATAGCAGAGCAGGAGAAAGATGCAGCTTTAGGAAATGGTGGTCTGGGCAGGCTTGCTTCTTGCTTTCTGGATTCCATGGCAACACTAAATTTGCCTGCTTGGGGTTATGGTCTGAGATATAGATATGGACTATTTAAACAGATAATCACCAAGGAAGGCCAGGAGGAACTTGCAGAGCACTGGCTTGAGTTTGGTTTGAATGCCAGCCGAAAATGGGTTGGAGGAGAGGTTGTGCAAGCGTTGGCATATGATGTGCCAATTCCAGGATACCAAACCAAGAATACCATCAGTCTTCGCCTTTGGGAAGCAAAAGCTTGTGCTGAGGATTTCAATTTGTTTTTATTTAATGATGGACAACATGAATCTGCTTCTGTTCTTCATTCACGAGCTCAACAGATTTGTGCGGTTTTGTATCCTGGGGATGCTACGGAAGACGGGAAACTTCTTAGGCTGAAGCAGCAATTCTTTCTCTGCAGTGCATCACTCCAGGACATAATTTTTCGGTTTAAAAAGAGGAGATATGGAAAGGAATCTTGGACATGGTCTGAGTTTCCTAGCAAGGTTGCTGTGCAACTTAATGATACTCATCCTACCCTTGCGATTCCTGAGCTAATGCGACTACTTATGGATTATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACAACAAGGACAATTGCTTACACTAACCACACTGTCCTTCCTGAGGCACTGGAAAAATGGTCTCAACCTGTAATGTGGAAACTACTTCCTCGCCATATGGAAATCATAGAAGAAATAGACAAGAGGTTCACTGCATTTATAAGTGCAACACGGTTGGACCTTGAGAGTAAGCTCCCTGCCATGCGCATTATGGACAATAATCCCCAGAAGCCAGTAGTTCGGATGGCAAATTTATGTGTGGTGTCCTCCCACGCTGTGAATGGTGTTGCCCAGTTACACAGTGACATTCTAAAATCAGAATTATTTGCGGATTATGTTTCAATATGGCCAAAGAAGTTCCAAACTAAAACCAATGGCATCACACCTCGAAGATGGCTCCGTTTTTGTAGTCCTGAGCTCAGTAAGATAATCACTAAGTGGTTAAAAACTGATCAATGGGTAACCAATCTTGATTTACTGGCAGGTCTTCGACAGTTTTCTGACAATGAAGACCTGCAAGCTGAATGGCTGTCTGCAAAGACAGCTAATAAGCAACGCTTGGCACAGTACGTTCTACAGGTGACAGGGGTGAGCATTGATCCAGATAGTCTGTTTGACATACAAGTCAAGCGCATCCATGAATACAAGAGACAGCTACTGAACATTCTGGGTGTGATTTATAGATACAAGAAGTTAAAGGAGATGAGCCCTGAAGAAAGGAAAAAAACAACTCCACGCACTGTGATGATTGGAGGGAAAGCTTTTGCTTCGTATACAAATGCTAAAAGAATAGTAAGGCTGGTTAATGATGTTGGTGCTGTAGTCAACACTGATCCCGAGGTGCTGATCCCAGGAAGTGAGCTGTCCCAGCACATCAGCACAGCAGGCATGGAAGCGAGTGGCACAAGCAACATGAAATTTGCATTAAATGGGTGCCTCATAATAGGTACTTTAGATGGAGCTAATGTTGAAATCAGGGAGGAAATTGGTGAGGAAAACTTTTTCCTCTTTGGCGCAACAGCAGAAGATGTCCCTCATCTCCGAAAGGAAAGAGAGAATGGACTGTTCAAATCAGATCCTCGTTTTGAAGAGGCAAAGAAGGTCATTAGGAGTGGGGTATTGGGAAGCTATGACTATAACCCACTGCTTGAGTCGTTGGAAGGAAATTCTGGTTATGGTCGTGGTGACTATTTTCTTGTAGGCCATGACTTCCCAAGCTACATGGATGCTCAGGAAAGGGTAGATGCTGCTTATCTGGATAGGAAAAGATGGCTAAAGATGTCCATATTAAGCACAGCTGGGAGTGGAAAATTCAGCAGCGACAGGACCATTGTTCAGTATGCCAAGGAAATTTGGAACATAGAAGAGTGCCGCGTACCTTAA	2598	0.4415	MLPRVVRLTVVELSSPHDPHIGFEMEMAGKVEVNGGGASSASAVSAKLSAVANPLAEKPDEIASDINYHAQYSTHFTSFTFELEQAYFATAESVRDRLIRVLYYLWMSXQQMHFLQENTDTDYSCGISRFLITIQWNETFVHFHKADPKQTYYLSMEYLQGRALTNAVGNLNIQEAYADALCKFGLKLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQIITKEGQEELAEHWLEFGLNASRKWVGGEVVQALAYDVPIPGYQTKNTISLRLWEAKACAEDFNLFLFNDGQHESASVLHSRAQQICAVLYPGDATEDGKLLRLKQQFFLCSASLQDIIFRFKKRRYGKESWTWSEFPSKVAVQLNDTHPTLAIPELMRLLMDYEGLGWDEAWDVTTRTIAYTNHTVLPEALEKWSQPVMWKLLPRHMEIIEEIDKRFTAFISATRLDLESKLPAMRIMDNNPQKPVVRMANLCVVSSHAVNGVAQLHSDILKSELFADYVSIWPKKFQTKTNGITPRRWLRFCSPELSKIITKWLKTDQWVTNLDLLAGLRQFSDNEDLQAEWLSAKTANKQRLAQYVLQVTGVSIDPDSLFDIQVKRIHEYKRQLLNILGVIYRYKKLKEMSPEERKKTTPRTVMIGGKAFASYTNAKRIVRLVNDVGAVVNTDPEVLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEENFFLFGATAEDVPHLRKERENGLFKSDPRFEEAKKVIRSGVLGSYDYNPLLESLEGNSGYGRGDYFLVGHDFPSYMDAQERVDAAYLDRKRWLKMSILSTAGSGKFSSDRTIVQYAKEIWNIEECRVP	865

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g1513	865	FunFam	Alpha-glucan phosphorylase 2, cytosolic	254	539	-	-
	Lele04g1513	865	Pfam	Carbohydrate phosphorylase	183	255	IPR000811	GO:0005975\|GO:0008184
	Lele04g1513	865	Pfam	Carbohydrate phosphorylase	259	859	IPR000811	GO:0005975\|GO:0008184
	Lele04g1513	865	PIRSF	Glucan_phosphorylase_GlgP	79	865	IPR000811	GO:0005975\|GO:0008184
	Lele04g1513	865	PANTHER	GLYCOGEN PHOSPHORYLASE	259	863	IPR000811	GO:0005975\|GO:0008184
	Lele04g1513	865	ProSitePatterns	Phosphorylase pyridoxal-phosphate attachment site.	703	715	IPR035090	-
	Lele04g1513	865	Gene3D	Glycogen Phosphorylase B;	47	125	-	-
	Lele04g1513	865	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	124	863	-	-
	Lele04g1513	865	CDD	GT35_Glycogen_Phosphorylase	65	859	-	-
	Lele04g1513	865	Gene3D	Glycogen Phosphorylase B;	132	860	-	-
	Lele04g1513	865	Gene3D	Glycogen Phosphorylase B;	532	844	-	-
	Lele04g1513	865	TIGRFAM	P_ylase: glycogen/starch/alpha-glucan phosphorylases	259	859	IPR011833	GO:0004645\|GO:0005975\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g1513	Lele-ChrLele04	20201342	20208353	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g1513	38	865	Glycosyltransferase	AT3G46970	74.253	0.0	1316

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele04g1513	04	20201342	20208353	Lele04g1513	04	20201342	20208353	ECH
	Lele01g1257	01	7623292	7635616	Lele04g1513	04	20201342	20208353	hybridization
	Lele02g1526	02	19355892	19367250	Lele04g1513	04	20201342	20208353	hybridization