Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1505 ATGAAGTGGGAAACGGGAATGTTCTCACCCAGACAATACATCGCCAATTCCAACACCAGCTGGATTATTGAAGATAATCGGAATTCCAAATGGACTCGTGCTGAGAACAAACTCTTTGAGAATGCTCTCGCGGTTTACGATAAGGATACACCAGATCGGTGGCAGAAAGTGGCCGCAGTGATCCCAGGGAAGACGGTCGTTGACGTGATGAAGCAGTACAAACAGCTTGAAGATGATGTTTGTGACATAGAAGCTGGTTTGGTCTCAGTTCCTGACTATTACGCGGACAGTACTCCTTCCTCACCTTTCACCTTGGACTCTTGGGCTAGCTTTTCTTCTGGTTATGATCCCTCGCTCGGAGTCCATGGAAAGAGACCCTCCTCTGGAAGATCCTCTGAAAATGAAAGGAAGAAAGGAGTCCCTTGGACCGAAGAAGAACACAAACTGTTTCTTCTGGGGCTGAAGAAGCATGGGAAGGGAGATTGGAGGAACATATCAAGGAACTTTGTGATGACTCGAACACCGACTCAAGTAGCTAGTCATGCTCAGAAATACTTCATAAGGCAACTTTCAGGAGGGAAAGACAAGAGAAGAGCAAGCATCCATGACATAACCACTGTGAACCTCACAGAAACTTCAATTAAAGCTTCTTCTCATTCACGAGACCCCACCAAGAAGTCCTCTTCTTCTTCTTCTTCTTCACCGCCACAACAGAACCATATGAACATGATGATGCTCTCACACTCATCACAGCAGCAGCAGAATTCTGCAGTTCCCAGCAGAACACAGTTTCAGTGGACCCAACAGCCAATAATGGCTACTTCTCTGAGTGATCCAGCACTAGATGAACTGTTCATGTCTGATTATTCTTATGGGATTGGTGATGACTTGTCATCTTCCTTTGGGTTTACAATGCAGGGCCAGAATCTGCACACAAGTTCTCTTCTTCATCATGAATCTTCTTCCTACTTAGGACCTCACAGTCAAAGCATGGTTTTCCAGATGCCATGA 1011 0.456 MKWETGMFSPRQYIANSNTSWIIEDNRNSKWTRAENKLFENALAVYDKDTPDRWQKVAAVIPGKTVVDVMKQYKQLEDDVCDIEAGLVSVPDYYADSTPSSPFTLDSWASFSSGYDPSLGVHGKRPSSGRSSENERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSIKASSHSRDPTKKSSSSSSSSPPQQNHMNMMMLSHSSQQQQNSAVPSRTQFQWTQQPIMATSLSDPALDELFMSDYSYGIGDDLSSSFGFTMQGQNLHTSSLLHHESSSYLGPHSQSMVFQMP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1505 336 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Lele04g1505 336 MobiDBLite consensus disorder prediction 118 140 - -
Lele04g1505 336 SUPERFAMILY Homeodomain-like 136 189 IPR009057 -
Lele04g1505 336 CDD SANT 141 186 IPR001005 -
Lele04g1505 336 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Lele04g1505 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Lele04g1505 336 Gene3D - 23 90 - -
Lele04g1505 336 SMART sant 138 188 IPR001005 -
Lele04g1505 336 SMART sant 27 79 IPR001005 -
Lele04g1505 336 FunFam Transcription factor SRM1 23 90 - -
Lele04g1505 336 MobiDBLite consensus disorder prediction 212 241 - -
Lele04g1505 336 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Lele04g1505 336 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Lele04g1505 336 CDD SANT 30 76 IPR001005 -
Lele04g1505 336 Gene3D - 140 190 - -
Lele04g1505 336 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 263 IPR043363 -
Lele04g1505 336 FunFam transcription factor MYB1R1 140 191 - -
Lele04g1505 336 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Lele04g1505 336 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1505 Lele-ChrLele04 20146665 20147934 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele04g1505 Myb_DNA-binding 9.8e-13 CL0123