Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1488 ATGGAGGCTTCATGGGAGCAAAGCGTTACATACTCCCTCAACACCATCTTCCTCCTCTTCTCTGCCTACCTCGTCTTCGTCATGCAAATCGGCTTCGCCATGCTCTGTGCAGGCTCCGTCAGAGCTAAGAACGCCGTCAACATTATGCTCACTAATGTCGTCGACGCCGTTGTAGGAAGCATCTCTTTCTACCTCTTCGGCTTCGCATTTGCCTTCGGCGACGGCTCCAATTCTAACCCTTTCATTGGCGCCGATCTCTTTGCTCTCGTCAGCATTCCAAATGGTACTTACGATTACGGTTTCTATCTTTACCAATGGGCTTTTGCTATCGCCGTAGCGGGCATCACAAGTGGGTCTATCGCCGAGAGAACCCAGTTCAGTGCTTATCTTGTTTTTAGTTTTTTCCTGGCGGGCTTTGTGTACCCGGTCGTGGCCCATTGGGTCTGGTCTTCCGACGGTTGGCTCAGTACTAATTCAAGCAATCTGTTTCTGGGCTCAGGTGCGATTGACTTCGCCGGGAGTGGAGTGGTGCATATGGTTGGTGCAGTAGCGGGGCTCTGGGGTTCACTCATACTAGGCCCACGGGTTGGCCGGTTTGATGCCTTCGGTAAGCCCGTGCCACTCCGAGGGCACAACGCAAGTCTAGTGGTACTCGGAACATTTCTTTTGTGGTTCGGATGGTTTGGGTTCAATCCTGGATCGTTCGATAAGATTTTGGTGTCATATCCCGACACATCCAATGAGGGTAATTGGACCTCCATTGGTCGAACAGCGGTTGTGACGACCTTAGCTGGTTCGACGGCAGGAATCATCACCTTGTTTGGCCGGCGATTGATAATTGGTCATTGGGATGCAATTGACGTTTGCAATGGATTGCTTGGCGGGTTTGTTGCTATCACCTCCGGATGCTCGGTGGTGGAGCCATGGGCTGCTATTATTTGTGGGTTTGTCTCGGCTTGGGTCTTGATTGGGCTGAACATATTGGCACTAAAATTGCACTATGACGACCCGTTAGAGGCGGCCCAATTGCATGGTGGGTGTGGGGCTTGGGGTTTGATATTCACCGGTTTGTTTGCCCAAGAGGAGCTTGTGATTCAAGTCTATGACAAAGGCATGACTGGGGTGGCTAGGCCCTATGGGCTTCTATTAGGAGGTGGATGGGCCTTACTTGGAGCCCAAATTGTGGAATTGTTAGCTATATTGGGCTGGGTTAGTATCACCATGGGCCCATTGTTCTATGCCCTACACAAGCTTAAACTATTGAGAATCTCGAAAGACGATGAAGTTACGGGCCTTGATATCTCAACACATGGAGGATCTGCTTATTCTCATCACGAGGAACCTCTATCTTACGCAGATTATATACGCGTTAGAGATAATCAATCATGA 1389 0.5011 MEASWEQSVTYSLNTIFLLFSAYLVFVMQIGFAMLCAGSVRAKNAVNIMLTNVVDAVVGSISFYLFGFAFAFGDGSNSNPFIGADLFALVSIPNGTYDYGFYLYQWAFAIAVAGITSGSIAERTQFSAYLVFSFFLAGFVYPVVAHWVWSSDGWLSTNSSNLFLGSGAIDFAGSGVVHMVGAVAGLWGSLILGPRVGRFDAFGKPVPLRGHNASLVVLGTFLLWFGWFGFNPGSFDKILVSYPDTSNEGNWTSIGRTAVVTTLAGSTAGIITLFGRRLIIGHWDAIDVCNGLLGGFVAITSGCSVVEPWAAIICGFVSAWVLIGLNILALKLHYDDPLEAAQLHGGCGAWGLIFTGLFAQEELVIQVYDKGMTGVARPYGLLLGGGWALLGAQIVELLAILGWVSITMGPLFYALHKLKLLRISKDDEVTGLDISTHGGSAYSHHEEPLSYADYIRVRDNQS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1488 462 TIGRFAM amt: ammonium transporter 14 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele04g1488 462 Pfam Ammonium Transporter Family 17 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lele04g1488 462 PANTHER AMMONIUM TRANSPORTER 10 440 - -
Lele04g1488 462 Gene3D Ammonium transporter AmtB like domains 2 457 IPR029020 -
Lele04g1488 462 SUPERFAMILY Ammonium transporter 11 423 - -
Lele04g1488 462 FunFam Ammonium transporter 1 456 - -
Lele04g1488 462 ProSitePatterns Ammonium transporters signature. 170 195 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1488 Lele-ChrLele04 20040420 20041808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1488 7 447 Inorganic Solute Cotransporters AT1G64780 67.411 0.0 600
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1488 04 20040420 20041808 Lele04g1488 04 20040420 20041808 ECH
Lele02g1504 02 19195593 19197125 Lele04g1488 04 20040420 20041808 hybridization