Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1474 ATGCCGACGCTGGTCAGCGTGGCAAGGCAATGCTTGACGGAGGAGGCCGCTCGCGCTTTGGACGACGCGGTGGCTGTTGCTCGCCGCCGCAACCATTCGCAGACAACTTCGCTTCATGCTATCTCTGCCTTGCTCGCCTTGCCTTCTTCCCCTCTCCGGGATGCTTGCACGCGCGCGCGTAGCTGCTCGTATTCCCCGCGTTTACAGTTCAAAGCTTTAGAGCTCTCTGTGGGCGTGTCTCTCGATCGATTGCCCACCACTAAGTCTCTCGAGGATGACCCTCCTGTATCCAATTCACTCATGGCCGCTATCAAGCGATCCCAAGCGAACCAGAGGAGGCATCCAGAGAGCTTTCATTTGATGCAGATGCATATGCATCAGCAGCAGCAGGCAGCCTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATTTTGTCCATTCTCGATGATCCGATCGTGAGCAGAGTTTTTGGGGAAGCTGGTTTTCGAAGCTGTGACATTAAGATTGCATTGCTTCAACCGCCTATAGCGCAAGCTTCTTCTCGATTCTTCCGGAGCCGTCACACACCTTTATTTTTGTCCAATCTAACAGGTTTGGAAATGGATCGTCCAGGTTTAAACTTCCCTTTCATGGCCAATCCTGGACACAAAGATGGAGACGAGAATTGTAGAAGAATTGCGGAGGTTCTTGTGAGTAAGACAAAGAAAAATCCCTTACTGATGGGTGTTTACGCGAAGGGTGCTCTTAGGAGATTCACAGACACTGTACGGAGAGGTCGAGTGGGTATGCTGTCGGCTGATATTTCTGGGCTTAATATGATTTGCATTGAGAAGGAGATTGCTGAGTTTTTTGTTGAAGGTGGCAGCGAAGACAAGATGGTTTTGAAATTTAAGGAATTGAGTCGTGCAGTTGAGCAGTGCTCAGGTCCGGGTATCATTGTGAATTTCGGAGAGCTTGAGGCATTCGTGGGGGATGGCGTGCGTGGTGTTGCTGTGAATTTTGTCGTCTCACAACTGACAAGCTTACTGGAAATCCAAGGTGAGAAATTATGGCTGGTCGGCATGGCAGGAAACTCTCTTATACACTCCAAGTTTATAACTATGTTCCCAACTGTGGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCTCCCCTTCAATTGAGGAGCTCTACTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACCCAGTAAGCTGTACAAATCAATCTTCTGCAAGCTGTCATGCATGCAATGAGAAGTATGAACAAGAAGTTGCTGATGTTTTGAAGGTAGGTCCTACAACTTCAGCATCTAGTCACTCAATGAGCTTGCCTTGGTTGCAACAGGTTAATGCGGATAAAGATAAACGATTGGATGTTGCAAAGACTAATGAAGAATTCACAAGTTTGAATACTACTATGATGGGATTGCAAAAGAAGTGGGCTGATAATTGTCAGCGTCTTCATCACAATGAGTCATTTTCTGACTTAAATATATCCCAATCAAAGGCTCAACTTCCCTCTCGTGATGGCTTACTATTTGGTTTGGGTGTCGGAGAAAGTAGCAGTAAAGATCTATCAGTTGATCAAATCCAACATTCTAAACATGGTCTCTACATGCCTAAAGAGTTACATAGTATTTACCCATCAAAGAAGATGTTACATGTTTCTTCAGAAACTTCTGGCATTGATACAGGAACTGACAAGGGAGCAGTTGGTTCAAAGAGTCAGCAAACTGACGTGCAGAAACCTTGGGTTGCCCCGTCCCCTGTGGGCAATATGAGTCAGGCTGATCACAGATCATCTTCCTCACTTTCTTCTGTGACCACTGATTTGGGATTGGGAACGCTATATACATCAGCAGCTCAGGAGCCAAATACCCCAAAAGTAAAAGATCATAGAGATAGTATACGGCACTTTTCAGACTCCATTTCGGCTGATCTTGATGCTGTGAATGAAAATACTTCACACCAAATTGCTCAATCCTCTCCTTGCTCTGGTCCCATGGACAGGAAACTGGATGCCGTAGATTTCAAGTCACTTAATCAGCTTCTTACTGAAAGAGTTAGCTGGCAAGCAGAGGCCATATCTACCGTCAATCAAACCATGTCCCGCGTAAGATGTGGCACCGGAAAGCATAGTGGTTCACATGCTAGAGCAGATGTATGGCTTGCCTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATTGCTTTAGCACTTACAGAGATAATATTTGGAAACACAGAAAAGCTGATATCTGTGGATATGAGTTCCCAAGACAGAGGCTACCCGTTAAATGTGGTTTTTGAATGCCAAAAGTCAATTTCTCATGACGCACTTAGGAGGAAGACAGCCGTGGACTATATTGCTGGGGAGTTGAGCAAACAACCCCATTCAGTTGTGTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAGTAGTTTACTCCAGGCAAGAAGAACAGGTAAATTTCCAGATTCACATGGCAGGGAAATCAGCAGCAGTAATTCAATCTTTATCGTAACTTCAAGTGTCTTCAGAGGCGAACACTCTTTCTTTCTGGAGAAGGAGCATGTGTTTTCGGAGGATAAAATCCTTGAAGCCAAAAGATGTCAAATGCAGTTATTACTTGGACATTCTTCTGAGGATTCCATAAGAAGCGGCGACACAAATGTCAGGGTAACACTGGTGGGAAGAGAGGCCTCCAAATCAACAATCCTGAATAAAAGAAAACTGAGTGAAAGAAGTGACTCTGTAGAACAATCAGCCAAATGCAAGGTACAGAAACAAGTCCTAGAGACATCAATATCTTATCTAGATTTGAATATGCCTCTCAAGGAGGTTGAAGAGGACTGGTTTGATGATTTCTGCAGTCAAATTGACGCCAGAATAACTTTTAAGCCCTTCGATTTCGATGCACTTGCCGAGAAAATCTTAAAAGGCATCAGTTCACTGTTTAAGATGACATTTGGATTAGGGTTTGAGCTTGAAATTGACTATGAAGTCATGGTACAGATCCTAGCAGCCGCTTGGTCATCTGAGAAGAAAAATGCTGTGGAGGATTGGGTTGAAAATGTACTCGGCAGCAGCTTCAATGAAGCCTTGCAGAAATACCAACCTGAATCTCAGAAATCCATGAAACTAGTTACCTGTGAAGGGATTTTTGTGGATGAGCAAGCTCATGGATTATGCCTTCCTGCTAATATTAACCTCAAGTAA 3273 0.4445 MPTLVSVARQCLTEEAARALDDAVAVARRRNHSQTTSLHAISALLALPSSPLRDACTRARSCSYSPRLQFKALELSVGVSLDRLPTTKSLEDDPPVSNSLMAAIKRSQANQRRHPESFHLMQMHMHQQQQAASFLKVELKHFILSILDDPIVSRVFGEAGFRSCDIKIALLQPPIAQASSRFFRSRHTPLFLSNLTGLEMDRPGLNFPFMANPGHKDGDENCRRIAEVLVSKTKKNPLLMGVYAKGALRRFTDTVRRGRVGMLSADISGLNMICIEKEIAEFFVEGGSEDKMVLKFKELSRAVEQCSGPGIIVNFGELEAFVGDGVRGVAVNFVVSQLTSLLEIQGEKLWLVGMAGNSLIHSKFITMFPTVEKDWDLHLLTMTSASPSIEELYSKSSLMGSFVPFGGFFSTPPEFKNPVSCTNQSSASCHACNEKYEQEVADVLKVGPTTSASSHSMSLPWLQQVNADKDKRLDVAKTNEEFTSLNTTMMGLQKKWADNCQRLHHNESFSDLNISQSKAQLPSRDGLLFGLGVGESSSKDLSVDQIQHSKHGLYMPKELHSIYPSKKMLHVSSETSGIDTGTDKGAVGSKSQQTDVQKPWVAPSPVGNMSQADHRSSSSLSSVTTDLGLGTLYTSAAQEPNTPKVKDHRDSIRHFSDSISADLDAVNENTSHQIAQSSPCSGPMDRKLDAVDFKSLNQLLTERVSWQAEAISTVNQTMSRVRCGTGKHSGSHARADVWLAFLGPDRVGKKKIALALTEIIFGNTEKLISVDMSSQDRGYPLNVVFECQKSISHDALRRKTAVDYIAGELSKQPHSVVFLENVDKADFLVQSSLLQARRTGKFPDSHGREISSSNSIFIVTSSVFRGEHSFFLEKEHVFSEDKILEAKRCQMQLLLGHSSEDSIRSGDTNVRVTLVGREASKSTILNKRKLSERSDSVEQSAKCKVQKQVLETSISYLDLNMPLKEVEEDWFDDFCSQIDARITFKPFDFDALAEKILKGISSLFKMTFGLGFELEIDYEVMVQILAAAWSSEKKNAVEDWVENVLGSSFNEALQKYQPESQKSMKLVTCEGIFVDEQAHGLCLPANINLK 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1474 1090 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Lele04g1474 1090 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Lele04g1474 1090 MobiDBLite consensus disorder prediction 573 599 - -
Lele04g1474 1090 MobiDBLite consensus disorder prediction 609 623 - -
Lele04g1474 1090 Gene3D - 683 986 IPR027417 -
Lele04g1474 1090 Gene3D - 10 172 IPR036628 -
Lele04g1474 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1027 IPR027417 -
Lele04g1474 1090 MobiDBLite consensus disorder prediction 573 623 - -
Lele04g1474 1090 Pfam AAA domain (Cdc48 subfamily) 739 863 IPR003959 GO:0005524|GO:0016887
Lele04g1474 1090 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 3 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1474 Lele-ChrLele04 19938523 19943327 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1474 04 19938523 19943327 Lele25g1689 25 24569210 24573396 CCT
Lele04g1474 04 19938523 19943327 Lele26g1689 26 20424285 20428780 CCT
Lele04g1474 04 19938523 19943327 Lele27g0400 27 3629132 3633399 CCT
Lele04g1474 04 19938523 19943327 Lele28g1693 28 19864495 19868976 CCT
Lele04g1474 04 19938523 19943327 Lele04g1474 04 19938523 19943327 ECH
Lele04g1474 04 19938523 19943327 Lele25g1154 25 7459199 7465760 ECH
Lele04g1474 04 19938523 19943327 Lele26g1153 26 7446381 7451113 ECH
Lele04g1474 04 19938523 19943327 Lele27g0927 27 17204610 17210856 ECH
Lele04g1474 04 19938523 19943327 Lele28g1146 28 7438307 7444097 ECH
Lele03g1232 03 7316094 7320925 Lele04g1474 04 19938523 19943327 ECH
Lele25g1154 25 7459199 7465760 Lele04g1474 04 19938523 19943327 ECH
Lele26g1153 26 7446381 7451113 Lele04g1474 04 19938523 19943327 ECH
Lele27g0927 27 17204610 17210856 Lele04g1474 04 19938523 19943327 ECH
Lele28g1146 28 7438307 7444097 Lele04g1474 04 19938523 19943327 ECH
Lele01g1219 01 7353530 7358347 Lele04g1474 04 19938523 19943327 hybridization
Lele02g1489 02 19089372 19094181 Lele04g1474 04 19938523 19943327 hybridization