Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1473 ATGTGCAGTGGTTCCGAGAGGAAACCCTCTCAAGCAGGTTTCGTTATGGAAGGTGAATATGGGAAACAAGAGGGGCTGCTTCATAATAAGACTTCTTCTGTGTTGCTTGAACTTGCAGCCTCAGATGATGCTGTGAGTTTCAAATATGCTGTTGAGCAAGAGGGTCTTGATGTTGATGAGGCGTGCTTGTGGTATGGAAGGAGGATTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTGCTATGTTTGGAAGCAAGGTTGTATTAAGTTATATACTCGGAACTGGTCGTGTTGATGTTAACCGGACTTGTGGATCAGATGGGGCTACCGCCCTTCATTGTGCTGTTGCGGGTGGTTCAGCCTCATCCCCTGAGGCTGTTAAGCTTTTGCTTGATGCATGTGCAGATGTTAATGCTGTTGATGCTAATGGTAACCAACCTTGTGACTTGATTGTCTCCGGGGTTAATTCGATCTTCATTTCGAGGAAGAGGATCCTACAAGCCATACTGAAAGGTAAGGATGTTATTGATGAGGCATGTCTGTCATTTGAGGATACAGCTAGCCAGATGGAGGAACAGCAACTGCAACAGCCAGATATGGCTGCTTCTCGTGTTTCGAAAGACGGGACTGAGAAGAAAGATTATCCTATTGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACGTTCAAAGTAAAGCCTTGCTCAAGGGCCTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCCGGGGAAAATGCTAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTCCCTTGCCCAGAGTTTCGGAAGGGATCATGCAGCAAGGGCGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCACAGTATAGGACACGGCTTTGCAAGGATGAAGCTGCTTGCACCAGAAGAGTTTGCTTTTTTGCTCATAAGCCGGAGGAGCTTCGCCCGTTGTATCCTTGTACTGGTTCAGCTATACCTTCTCCCAGATCATTTTCATCTAGTTCTTGTTCATTGGATATGGGATCGCTTAGCCCTCTCTCACTGAGTTCTTCATCTGTCATGATACCTCCAGTCTCAACACCGCCTCTGACTCCTTCTGGTGCATCTTCTCCTGTTGGTGGAACCATGTGGCAGGCCCAATCTAATGGTGGAGTGCCTACCCTGCAACTGCCAAGAAGCAGACTAAAAACTGCTTCAAATGCTAGAGATGTTGATTTAGATATTGAGTTACTTGGACTTGAAAATTACTGGCGCAGGCAGCAGATAATGATGGATGAGATTTCTGGTCTTTCATCACCATCAAGCTGGAATAACTCCATGCCTGATAACCATTCTTTTCCGGTTTCTTTCAGTGATCAAATTGGGGAGCTGAATAATAGGCTTGCAGCGATGAAGCCTACCAACCTTGATGACATTTTCGGGTCAGTTGATCCATCAATTTTGCCTAAATTACAGGGAATTTCACTAGACACTGCTGGACCTCAGTTGCAATCTCCAACTGGGTTCCAGGCGCTGCAGAATGCGAATCAGCATCTGCGAAACTATTCTTCTGGCCTCTCCAATGCAAATGGGATGGGATCGCCGTCTTCTGTGAATGATCCACCTGTATCAGCAGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCATTTTGTAAGAGAAGCCAGAGCTTTATTGAGCGCAGCAGCACAGTAAACCGTCATCCAGAGCTTTCTTCTCCGGTTTCTTCAACAACAAAAGCTTCTGCTGTCTTATCAGACTGGGGATCCCCTGGTGGAAAGTTGGACTGGGGCATCCATGGAGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCTTTCGGATTTCGCAGCAGTAGGAGTACCCGAGTGCCAGCAAATCTCGATGAACCAGATGTTTCTTGGGTTCATTCTATCGTAAAGGATGCTGCGCCGCCAGAACCTGGTCAATTTAGCGTTGAAGAACAGCAAAAGCAGCAGATGCAATGCCATCGTAACAATGGAACAGATGCGGTTCCAGCTTGGCTGGAACAATTTAACATTGAGCAGGAGCAGATGGTAGCATGA 2139 0.4624 MCSGSERKPSQAGFVMEGEYGKQEGLLHNKTSSVLLELAASDDAVSFKYAVEQEGLDVDEACLWYGRRIGLKKLSYEERTPLMIAAMFGSKVVLSYILGTGRVDVNRTCGSDGATALHCAVAGGSASSPEAVKLLLDACADVNAVDANGNQPCDLIVSGVNSIFISRKRILQAILKGKDVIDEACLSFEDTASQMEEQQLQQPDMAASRVSKDGTEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEAACTRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSSSCSLDMGSLSPLSLSSSSVMIPPVSTPPLTPSGASSPVGGTMWQAQSNGGVPTLQLPRSRLKTASNARDVDLDIELLGLENYWRRQQIMMDEISGLSSPSSWNNSMPDNHSFPVSFSDQIGELNNRLAAMKPTNLDDIFGSVDPSILPKLQGISLDTAGPQLQSPTGFQALQNANQHLRNYSSGLSNANGMGSPSSVNDPPVSAATTMALNARLAAFCKRSQSFIERSSTVNRHPELSSPVSSTTKASAVLSDWGSPGGKLDWGIHGEELNKLRKSASFGFRSSRSTRVPANLDEPDVSWVHSIVKDAAPPEPGQFSVEEQQKQQMQCHRNNGTDAVPAWLEQFNIEQEQMVA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1473 712 Pfam Ankyrin repeats (3 copies) 59 146 IPR002110 GO:0005515
Lele04g1473 712 ProSiteProfiles Zinc finger C3H1-type profile. 283 305 IPR000571 GO:0046872
Lele04g1473 712 PANTHER UNKEMPT FAMILY MEMBER 37 666 IPR045234 -
Lele04g1473 712 SMART ANK_2a 112 144 IPR002110 GO:0005515
Lele04g1473 712 SMART ANK_2a 77 107 IPR002110 GO:0005515
Lele04g1473 712 Gene3D - 117 165 IPR036770 -
Lele04g1473 712 Gene3D - 27 116 IPR036770 -
Lele04g1473 712 Gene3D - 279 341 - -
Lele04g1473 712 SMART c3hfinal6 278 304 IPR000571 GO:0046872
Lele04g1473 712 SMART c3hfinal6 313 336 IPR000571 GO:0046872
Lele04g1473 712 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 303 IPR000571 GO:0046872
Lele04g1473 712 SUPERFAMILY Ankyrin repeat 36 161 IPR036770 -
Lele04g1473 712 FunFam Zinc finger CCCH domain-containing protein 66 236 304 - -
Lele04g1473 712 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Lele04g1473 712 Coils Coil 703 712 - -
Lele04g1473 712 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1473 Lele-ChrLele04 19930734 19932872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1473 33 707 C2H2 Transcription Factor Family AT5G12850 39.306 5.79e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele04g1473 Ank_2 3.4e-08 CL0465