Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1467 ATGACAAGTGATCTAAAGGCAACAAACCCAGAGAAAGAAGAAGAAGAAGAAGATGATTATGATGATGAGCTGTTTGAGGAAGGAGATGAAAAATCATCGGATTGTGCAGTTAATCGCAACAGCTCTCAAAACACTCCCTTTTCCCTGAGACTGCAAAGGATAGAAAAGATCTTGACAGAACTTGGTTCTTACAGATACTTTCTAAGATCCGGGTTTCCTTGCCCAAAAACCTGTCCAGAGAGATTTCTTCAGCAGCCTCCAAAACAAGCTCCTTGTGAAAAAGGCCTGGAGGCAAAAGAGAGCCAGGAAAGAAGAGTGAGGAGTATGGAAGATGGCTTTTTGGGTTCATGGCACCCAGGGACTGTTGTCCAATGGGGAAAGCAGAAACGTTATGTAAAATACGACCATGTTTTAGATGATAATGGGTCAAAATATCTTGTCGATATAGTGAATAATGTTCCAGCTATTTTGGATGGTGCCAGTGTTATTTTTTATCATTTTGATGGGAAGGAGGAGAGATCTGTATTTTTCCCAGATTTGGGTGATGAAATGAAGATCAAAATTGATCATTTGTGTATTACTCATGACTGGAGTGAAGTTAAAGGGAGATGGGAGAGACGGGGCCTGTGGGTGTTTCTTGAATTGGTTGAAGAGTTTGAATGGGATAATTATGTTGCAGTTTCATTAAAGCAAATCTGGTATGATGTGCGTGCCAAAGAAGATTTCAATAAGATGAAAGACTGGACTTGTATGAAAGACTTGTGGAGAGGTCTGGTACTAGAGGTAATTCATGACTACTTTGCACTTACACTGACAGAAGTCTTGGATCTTTCAAAAGATCTTTTGACAGAAGCACTAGAACCAGAGTCAGGTGAACCTACTGCTGATACTTACGTAAATCCGGAAAGAAAGTCAGACAACTTTCATTCTGTTTCAAATTCTGATAATCAGTTAACTAGAAACTCAAATGTTCTTTATGATGCCGGTCCTAGTAATGCATTTGTCCATGACATAAGTTTGGATGAGAACCATTTGGAAAGAGGTGACATGTCAAATTTCTTGGATGCTGATCAAAACAGTGGTAGCGTCATTCTTATCCAGGAGAAAAATGATTTGAAGACCTTGGGGGACGGAATGTCAAATACGACTGTGGTGGCAGACTTAGACATGTCCTTCCCTGAGAAGGAAGGATTGGTGCAGAAGGAATCCATATCACCTGAAGAAGAGATCTTACCAGATATTCCTGAAGAAATTTCTGGGCTGGATGCTGGGTTGACCGATTGGGAACCTCTGATACTTTCTGAAATTGAACTATGTCCTGATTCTGTTCATCAATACGTACTTGCATCTAATAGGAAGGCCAGGGAACAACTGAAGACAAATGTCAGAAACCATATTGCATATCTTGGATGGAAAATTGAGTGGAGGCTACATAAAGGCAGTTATCAACAAAGGCGATATAGGTACACCTCACCTCAGATACAGGGAAAACAGGTCATTTACATGTCACTTCGTGAAGTTTGTAAACATATTGAAAAGGACACCACTACGGACTCTTTGTTTTCCCAAGAGGATCAGAGAAGGATGTATCCTACAATTGACAGTGATATTTCCCATCCTGCAATTTTGCCACCTCCTTCTGTTGAAGACATAGTTGAACCTGAATCTTGCCTTGAAGCTGTTTTGAGATATTACTTGCTTCCATTAAAGAGGGGCATCAGTTCTGTTAAAAAAATTATGATACCAAAGGTAAGAAAACACCTGTTAGCAGAAGGATGGAATTGTGAGTATCCAGCCATAAGAGGAAGGCCATTTATCTACATTTCACCACAAAATCAGCGTTTTGGCTCGCTTCGAGAAGCATGCAGAGAATGTAACAAAGAATGTCTTCCTAAGTGGATTAGTTCTGGAATGATACCTCTGGATGTCTCAGGCATAAATGAAGAGAAAAATGATCCGGTTGACAGTGATAAATTATCGTGCTATGTGTCCCAATTGCTTCAAAAGGAGCCTGATTTGTATGATGTAAACGGTGCACCAGTAAGTATATCAATTGGGCAATGCAAGCCAAAACCCTTAAGGAAGCTAAAGTCCCAAGATAATCAGAGAAGGATGCATTCTACTATTGACGGTAATATCTCACATCCTGCAATTTTGCCACCTTCTTCTGTTGAAGTTGTGATTGAGCCTGAATTTTGTCCTGAAGCTGTTTTGAGATATTACTTATATTCATCAGAGAAGAGCCCCAAGGATGTTAAAAAATGTATGATGCTAAAGGCAAGAAAACACCTGTCAGCAGATGGATGGAATTTTGAGTATCCAACCATAAGAGGAAGGGGAATGATCTACATTTCACCACAAAATCTGCGTTTTGGCTCACTTCGATTAGCGTGTGGAGCACATATTAAAGAATGTCTTCCTGAGTGGATTAGTTCTGGAGCAATGCCTCGAGATGGTTTGGGCCTAAATGAAGAGAAAATGAGTCACGTTGACAGTAATAAACTAATGTGCTATGTGTCTCAATTGCTTCAAAAGGAGCCTGCATTGTCTGATTTAAGTGGGGTACCAGAAAGCATATTAACTGGGCATTGCAAGCTCAAAGCCTCCAGGAATCCAAAGTCCAGGCCACCTAAGCTCCAAAAAAAAAGATTATCTATTCGGTTACAAAGATCAAGCAAAAGGGTGCAGAAGTTACTCCTGGATTTCCAGATTCAGATAATGAATGACCATAGGACAAGAGGAACTACGAAAACACCATCGAGAAGTGTATATCAAGAAGAGAATGATGGAATCTGTTCTGTTTGTCAATATGGCGGTGAACTAATATTATGTGATAATTGCCCATCTTCTTTTCACAAAAGCTGCCTAGGTTTGGAGGATATCCCTGAAGGGGACTGGTTTTGCCCATCTTCTTGTTGTGGAATTTGCCGCCAAAGTAAAACTGAAGGGGCTGATGATGAAAAACTTTTGACTTGCAGTCAGTGTGAACATAAATATTATGGCAAGTGCTTGGCGAAAAGAAATGACCTAGAGGTAGAGAGTTACACCAAACTCAATGTGGCTCTTTCAGTGATGCATGAATGTTTTGAGCCCTTGAAGGAATCTCACTCAGGCAGAGATCTAATGGAAGATGTTATTTTCAGCAGATGGTCAAAGCTCAATCGATTGAACTTCCAAGGTTTCTATATTGTACTCCTGGAGAGAAATGAAGAAGTGATAACTGTGGCAACTGTTAGGGTCAATGGAGAGAAGGTAGCAGAAGTACCTCTTGTGGGAACCAGATTTCAGTATCGTCGCCTTGGAATGTGTCGCATATTAATGGACGAGCTTGAAAAGAGGCTCATGCAACTCGGGGTGGAGAGGATAGTTTTGCCGGCTGTTCCAAGTGTGCTAAACGCGTGGACCAATTCTTTTGGATTTTCAAAGATGACAAATTCTGAGAGATCACAGTTTCTGGACTGTACTTTTCTTGACTTTCAAGACACCGTCATGTGCCAGAAACTTTTGTCCAAGACTCGCCCAGCTTTGGTTTTGTCAACAGAGAGACGTACAAAACCACATGAAATTTTATCTGTAAGTGATGGTGCTGGTTTTGATCAGTCCAGTCCAGTATCTGAATATCTGACAATGTTATTTTTGGCAATGCTTTTTGCTGGCAACGATGATCGTCTTGGTAATGATGCCTCTACTCCAGTTGTTTTGGCGAAGCCTGCGAATTCCGAGGGTGAACAATTGCAGAACGGAAGCATTCCAGAATGCTCACTTGAAGATGGCCGCTTAAAACATGTTTCCACCTGTAAGGCTGAATCTACGTTGCCCAAAACTACCACTTGCAGAGTTGTAAATGTAATTAGGTCAAATGGTTTTGGAGGACATTATGCTCAAAGCTAA 3891 0.4081 MTSDLKATNPEKEEEEEDDYDDELFEEGDEKSSDCAVNRNSSQNTPFSLRLQRIEKILTELGSYRYFLRSGFPCPKTCPERFLQQPPKQAPCEKGLEAKESQERRVRSMEDGFLGSWHPGTVVQWGKQKRYVKYDHVLDDNGSKYLVDIVNNVPAILDGASVIFYHFDGKEERSVFFPDLGDEMKIKIDHLCITHDWSEVKGRWERRGLWVFLELVEEFEWDNYVAVSLKQIWYDVRAKEDFNKMKDWTCMKDLWRGLVLEVIHDYFALTLTEVLDLSKDLLTEALEPESGEPTADTYVNPERKSDNFHSVSNSDNQLTRNSNVLYDAGPSNAFVHDISLDENHLERGDMSNFLDADQNSGSVILIQEKNDLKTLGDGMSNTTVVADLDMSFPEKEGLVQKESISPEEEILPDIPEEISGLDAGLTDWEPLILSEIELCPDSVHQYVLASNRKAREQLKTNVRNHIAYLGWKIEWRLHKGSYQQRRYRYTSPQIQGKQVIYMSLREVCKHIEKDTTTDSLFSQEDQRRMYPTIDSDISHPAILPPPSVEDIVEPESCLEAVLRYYLLPLKRGISSVKKIMIPKVRKHLLAEGWNCEYPAIRGRPFIYISPQNQRFGSLREACRECNKECLPKWISSGMIPLDVSGINEEKNDPVDSDKLSCYVSQLLQKEPDLYDVNGAPVSISIGQCKPKPLRKLKSQDNQRRMHSTIDGNISHPAILPPSSVEVVIEPEFCPEAVLRYYLYSSEKSPKDVKKCMMLKARKHLSADGWNFEYPTIRGRGMIYISPQNLRFGSLRLACGAHIKECLPEWISSGAMPRDGLGLNEEKMSHVDSNKLMCYVSQLLQKEPALSDLSGVPESILTGHCKLKASRNPKSRPPKLQKKRLSIRLQRSSKRVQKLLLDFQIQIMNDHRTRGTTKTPSRSVYQEENDGICSVCQYGGELILCDNCPSSFHKSCLGLEDIPEGDWFCPSSCCGICRQSKTEGADDEKLLTCSQCEHKYYGKCLAKRNDLEVESYTKLNVALSVMHECFEPLKESHSGRDLMEDVIFSRWSKLNRLNFQGFYIVLLERNEEVITVATVRVNGEKVAEVPLVGTRFQYRRLGMCRILMDELEKRLMQLGVERIVLPAVPSVLNAWTNSFGFSKMTNSERSQFLDCTFLDFQDTVMCQKLLSKTRPALVLSTERRTKPHEILSVSDGAGFDQSSPVSEYLTMLFLAMLFAGNDDRLGNDASTPVVLAKPANSEGEQLQNGSIPECSLEDGRLKHVSTCKAESTLPKTTTCRVVNVIRSNGFGGHYAQS 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1467 1296 MobiDBLite consensus disorder prediction 11 29 - -
Lele04g1467 1296 Pfam Acetyltransferase (GNAT) family 1040 1127 IPR000182 GO:0016747
Lele04g1467 1296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 917 1027 IPR013083 -
Lele04g1467 1296 SUPERFAMILY FYVE/PHD zinc finger 917 969 IPR011011 -
Lele04g1467 1296 CDD NAT_SF 1063 1124 - -
Lele04g1467 1296 MobiDBLite consensus disorder prediction 1 42 - -
Lele04g1467 1296 Pfam PHD-finger 931 970 IPR019787 -
Lele04g1467 1296 MobiDBLite consensus disorder prediction 300 316 - -
Lele04g1467 1296 Pfam Agenet domain 106 150 IPR008395 -
Lele04g1467 1296 SMART PHD_3 931 973 IPR001965 -
Lele04g1467 1296 MobiDBLite consensus disorder prediction 288 316 - -
Lele04g1467 1296 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1024 1169 IPR000182 GO:0016747
Lele04g1467 1296 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1042 1140 IPR016181 -
Lele04g1467 1296 Gene3D - 1028 1155 - -
Lele04g1467 1296 ProSiteProfiles Zinc finger PHD-type profile. 929 974 IPR019787 -
Lele04g1467 1296 PANTHER PHD FINGER PROTEIN 12 1007 1206 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1467 Lele-ChrLele04 19885876 19896997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1467 756 1173 PHD Transcription Factor Family AT5G63900 30.469 1.30e-57 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele04g1467 Acetyltransf_1 0.0003 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1467 04 19885876 19896997 Lele25g1685 25 24481171 24491055 CCT
Lele04g1467 04 19885876 19896997 Lele27g0403 27 3703462 3713054 CCT
Lele04g1467 04 19885876 19896997 Lele28g1687 28 19784625 19791341 CCT
Lele04g1467 04 19885876 19896997 Lele04g1467 04 19885876 19896997 ECH
Lele01g1213 01 7290296 7304754 Lele04g1467 04 19885876 19896997 hybridization
Lele02g1484 02 19039904 19042677 Lele04g1467 04 19885876 19896997 hybridization