Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1463 ATGACTTCTTGGGTGAGAGGGAATTGTACCGGTAAGGGGGCGTTTGGCACCGTCAGTGTTGGGATTGACCGATGGGACGGTCGGGTTTTTGCGGTGAAATCGGTGGATCTCAAGATGGGTCTTCCGGCTCAGGTGAAAGCTCTGGAGAATGAGATTCGAATTCTCCGGCAGGTGTCGCCATCGCCTTACGTAGTGGAGTTTCTTGGGGATGATTTCACGACGTCGTATCGGAATTTGCATATGGAGTATATGCCGGGTGGCACCCTGGCTGACCTGGCGTCTTGGAATGTTGACGTGGATGAGGATTTGGTGAGGTACTATACGTGGTGCCTGGTGAACGCTCTGAGGCACGTCCACTCGAAGGGCGTCGTGCACTGCGACGTGAAGGGGAGGAACGTTCTGTTGGGGCCGAACGGCTGCGTCGCGAAGCTCGCCGATTTCGGCTCAGCGGTTGAGTTTTCCGGTGAAGAGTGCTCGGCGGCGGTTCTGCCTCGGGGGAGCCCGCTTTGGATGGCTCCGGAGGTGATCCGGGGGGAGTATCAGGGACCAGAGTCCGACGTGTGGTCATTGGGATGCACGGTGATCGAGATGGTCAACGGAAAGCCGGCATGGGAAGATCACGGCGGCGACACGCTAAGACGAATCGGATACTCGGACGACTTACCCAAATTCTCGGTTCAATGTTCAGAGCTCGCTCGGGATTTCCTCGAGAAGTGCCTGAGGAGGGAACCTAAACAGCGGTGGAGCTGCGATCAGCTGCTGCAGCACCCATTTTTGTCATCTGCGTCTCCCAATAAGCCGGTGGAGTCGTCTCCTCGTTGCATTCTTGACTGGAACAACAACTCAGAATTCGCCGAAGATGATGAAGAAGAGAAAATCAGATTCGATAACAATGCTGAAGCTTCAGCTAAGGAAAGAATCCGTAAATTAGCCACAACACTGAGGGAAAATTGGGAAACAGAAGGTTGGGTGGCGGTGAGAGGCCTGACATCAGACGCAGAAGCTACAGTAATGGAAACAGGGGACAGTGGGAATGGAAAGGGGGACGAAGCAGGGACAAATTCGGAATGTTCGCATCGGATGGGGGCAGAAGAGGAAATGAAAGTAGGGACAAGTCTGGAATATTCGCATAATGTAGGAAGGGCAAATCCGAGAAAGTGGGAATGGGATGGCAAGTGGTCGTTGGGGTGGCGGTGTAATCACGGGGAAGGAAACGAAAGAGGCAACTTAGCTGGTCGGAGCTGTTCTTATAAGTATATGTCAGAGAATGTAGATCTACATTTAGTGCGGAGGATAAAAGTAATGATAGGCATTATTGACAGCCTGTATTGTAAATTATTCATATCATGTTACATAAATCCCTCGCCATTAATGAATTCAACCCTGTTATTTTCTCCAATTATTTATTTTCTACCGTTTTTCCTTTAA 1428 0.5105 MTSWVRGNCTGKGAFGTVSVGIDRWDGRVFAVKSVDLKMGLPAQVKALENEIRILRQVSPSPYVVEFLGDDFTTSYRNLHMEYMPGGTLADLASWNVDVDEDLVRYYTWCLVNALRHVHSKGVVHCDVKGRNVLLGPNGCVAKLADFGSAVEFSGEECSAAVLPRGSPLWMAPEVIRGEYQGPESDVWSLGCTVIEMVNGKPAWEDHGGDTLRRIGYSDDLPKFSVQCSELARDFLEKCLRREPKQRWSCDQLLQHPFLSSASPNKPVESSPRCILDWNNNSEFAEDDEEEKIRFDNNAEASAKERIRKLATTLRENWETEGWVAVRGLTSDAEATVMETGDSGNGKGDEAGTNSECSHRMGAEEEMKVGTSLEYSHNVGRANPRKWEWDGKWSLGWRCNHGEGNERGNLAGRSCSYKYMSENVDLHLVRRIKVMIGIIDSLYCKLFISCYINPSPLMNSTLLFSPIIYFLPFFL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1463 475 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1463 475 FunFam Serine threonine protein kinase putative 2 311 - -
Lele04g1463 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lele04g1463 475 CDD STKc_MAPKKK 3 259 - -
Lele04g1463 475 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 328 - -
Lele04g1463 475 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1463 475 SUPERFAMILY Protein kinase-like (PK-like) 4 276 IPR011009 -
Lele04g1463 475 Gene3D Transferase(Phosphotransferase) domain 1 2 331 - -
Lele04g1463 475 Pfam Protein kinase domain 10 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1463 Lele-ChrLele04 19850313 19851740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1463 4 343 MAP Kinase Kinase Kinase AT1G07150 57.849 1.18e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele04g1463 Pkinase 1.9e-56 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1463 04 19850313 19851740 Lele04g1463 04 19850313 19851740 ECH
Lele01g1209 01 7271241 7272734 Lele04g1463 04 19850313 19851740 hybridization
Lele02g1479 02 18981753 18996525 Lele04g1463 04 19850313 19851740 hybridization