Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1424 ATGCAACACGGAGACTATAGCTCATCTCCTTATTATCAATTCCCTCCGACACAGAACCCAATTCCCAATCCTAACCCTAATCCTATCCCTCCCGATTCAGTCCCCAATCCGTACGCCTCAGCTCCACCTTTCACCTCGGATTACTCGCCTTACGCCTCTACTTATCCTCCATACCCTCAAAATCCCGATCCTATGCCAGTCCCTCCGACTGCCCCCTCATACCCTCCAACCTCCAACCCCAATTTGAGCTCTTTCAGTTCTCCTCCCCTATCATCCTCTTTTCCTCCGTTTGAGTCCCATGTCCCGTATCAACAACCTCCACAACAACAATGTCAATATCCCCCATATGATCAACATCAAACGGCCCCAAGTTATGCCCCTTCTTCCTCCGCAATTCCTCCAAACCCCACTCCCAATTCTGTAACACCGTCCTTCTATCCGGCTTCGTACACTCACCCTGGATCGTCGATTCCTCCTACATATGAAAGTCCGTACGAGAATTCCGTGAAATTCGATTATGGTGGTGCTTATGTCGATGACAAGTATGGAAGTTTTAATCGGAATCGGTCTGATTTGGGGTCGGATTTGTATGGAAAGCGACCGGATACGAGGCATGATACTGTTCGTGATGATATTTATGGAGATGGTGTCTACGCCTATAGAGGGGGCGAAACAGAACCATATGGAGCACGGGGTACGGCTCCTAAGTCTTCAACTTGGTCCGGTTTTGATGATTATGGGAGGTCAATTAGTTCTCCCTCTGCGAAGGAACACTCTTTTTCTAACAAGGTTGTGAAAGCTGTGCCGAAGGCTGATACCCAAGAGGATGTTAAAAGTGGAGTGCAAAAATTTCGTGTCAAGCTATTGGCAGAAAGTGGTGGTCTGAGCCATACTGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAGTACCAGCCGGCTGTTGAGAGTTTATCATATTGAGAACATCACGAGATGTGAAAAATTCGATTCCAGTACCCTTGCGTTTTGGTCCAAGAGTCCAGTTGACATTGAACCAAGACGAATCAGATTGCAATCCAATAGTTACACCACTAACACTCTCTTGGATACAATTACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGTAGGAGGCCTGTTGAGTCATTGAAAACAAATGAACAACCTACAGAAAAGAAGAAAGGCCTTGTTGATTGGATGAATCTGATCAAACCTGCCAATGAGGAGAAAGATCATTGGATCCCAGATGAAGCAGTTTCAAAATGCACAGCATGTCTGACTGATTTTGGGGCTTTTGTTCGTAAGCATCACTGTAGGAACTGTGGGGATATTTTCTGTGACAAATGCACACATGGTAGAATTGCTCTAACTGCGGATGAGAATGCTCAGCCAGTACGAGTTTGTGACCGATGCATGGCAGAAGTGACACAGAGGCTCAGTAATGCTAAAGAGGCTCCAAACAAGCCTGTATCGCAAAGTCATGAGGATCTTGCGAGGAAACTTCAGGAGGAGCTGGAGAGGAATCGGAGGACATCAGGTTCCAAGTCTGATGGATCTGGAAGGCGGATGAAGGAAGTTGAATGCCCCACTTGCACAGTCCATCTGCAGGTCCAAGTACCTACCTCGGGTTCAGAGACCATTGAGTGTGGGGTTTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1707 0.4687 MQHGDYSSSPYYQFPPTQNPIPNPNPNPIPPDSVPNPYASAPPFTSDYSPYASTYPPYPQNPDPMPVPPTAPSYPPTSNPNLSSFSSPPLSSSFPPFESHVPYQQPPQQQCQYPPYDQHQTAPSYAPSSSAIPPNPTPNSVTPSFYPASYTHPGSSIPPTYESPYENSVKFDYGGAYVDDKYGSFNRNRSDLGSDLYGKRPDTRHDTVRDDIYGDGVYAYRGGETEPYGARGTAPKSSTWSGFDDYGRSISSPSAKEHSFSNKVVKAVPKADTQEDVKSGVQKFRVKLLAESGGLSHTDVLCQIGLDGIRMLDPSTSRLLRVYHIENITRCEKFDSSTLAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTITAATIQFKEMGGSRRPVESLKTNEQPTEKKKGLVDWMNLIKPANEEKDHWIPDEAVSKCTACLTDFGAFVRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLSNAKEAPNKPVSQSHEDLARKLQEELERNRRTSGSKSDGSGRRMKEVECPTCTVHLQVQVPTSGSETIECGVCQHPFLVSAH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1424 568 MobiDBLite consensus disorder prediction 15 38 - -
Lele04g1424 568 PRINTS Proline rich extensin signature 14 26 - -
Lele04g1424 568 PRINTS Proline rich extensin signature 64 85 - -
Lele04g1424 568 PRINTS Proline rich extensin signature 28 44 - -
Lele04g1424 568 PRINTS Proline rich extensin signature 119 136 - -
Lele04g1424 568 PRINTS Proline rich extensin signature 50 62 - -
Lele04g1424 568 MobiDBLite consensus disorder prediction 39 54 - -
Lele04g1424 568 SUPERFAMILY FYVE/PHD zinc finger 418 488 IPR011011 -
Lele04g1424 568 Pfam FYVE zinc finger 419 483 IPR000306 GO:0046872
Lele04g1424 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 488 IPR013083 -
Lele04g1424 568 MobiDBLite consensus disorder prediction 77 128 - -
Lele04g1424 568 MobiDBLite consensus disorder prediction 142 162 - -
Lele04g1424 568 PANTHER PROTEIN FREE1 1 568 IPR045893 GO:0036258|GO:0043130
Lele04g1424 568 SMART fyve_4 415 484 IPR000306 GO:0046872
Lele04g1424 568 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 483 IPR017455 -
Lele04g1424 568 FunFam Zinc finger, FYVE-type, endofin 410 488 - -
Lele04g1424 568 MobiDBLite consensus disorder prediction 1 162 - -
Lele04g1424 568 MobiDBLite consensus disorder prediction 55 76 - -
Lele04g1424 568 Coils Coil 498 518 - -
Lele04g1424 568 CDD PTB 258 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1424 Lele-ChrLele04 19551137 19554556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1424 411 496 EF-hand Containing Proteins AT3G14270 34.021 3.70e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1424 04 19551137 19554556 Lele25g0050 25 306720 309991 CCT
Lele04g1424 04 19551137 19554556 Lele26g0061 26 335090 338293 CCT
Lele04g1424 04 19551137 19554556 Lele27g2036 27 24403034 24406313 CCT
Lele04g1424 04 19551137 19554556 Lele28g0060 28 332220 336525 CCT
Lele04g1424 04 19551137 19554556 Lele04g1424 04 19551137 19554556 ECH
Lele01g1175 01 6999030 7003466 Lele04g1424 04 19551137 19554556 hybridization
Lele02g1442 02 18691502 18695355 Lele04g1424 04 19551137 19554556 hybridization