Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1410 ATGGCGGGACCCACGAGGGGAAATGCTGACATGGACAACATGGATCATCCAGATGCAGAACTTCCCAGAATCGGTTTGCCCCTGGGTTTTGATTATTTTCCTCTGCCCCAATCGGAACGCCCAGACGACACAATGATCGATTCCGTTCTTCTGGCACTCTTCTTGCCCTGCCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGCCTTCTCTGGTATGCCACTACCCGCCGTCCTCAAGTCGAGCTGCCGTCGAAGCCCGCGCAGGAGAAGGGCTTGTCGGCGTCGGAGCTGGAGAAGATGCCCAAAGTCACCGGGAAGGAACTGGTGATGGGGAGTGAATGCGCTGTTTGTCTCGACGAGATCGAGAACGAGCAACCGGCTCGACTTGTTCCAGGTTGCAACCACGGGTTCCATGTGCAATGCGCCGATGCCTGGCTTTCCAAGCACCCTCTCTGCCCGGTTTGTAGAGCGAAGCTGGATCCTCAGCTTCTCAATCCCTGTGAAAATCCCTGCTAA 519 0.5626 MAGPTRGNADMDNMDHPDAELPRIGLPLGFDYFPLPQSERPDDTMIDSVLLALFLPCLGMSAVFMVYMCLLWYATTRRPQVELPSKPAQEKGLSASELEKMPKVTGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVQCADAWLSKHPLCPVCRAKLDPQLLNPCENPC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1410 172 Pfam Ring finger domain 114 157 IPR001841 -
Lele04g1410 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 51 166 - -
Lele04g1410 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 163 IPR013083 -
Lele04g1410 172 SUPERFAMILY RING/U-box 100 163 - -
Lele04g1410 172 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lele04g1410 172 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1410 Lele-ChrLele04 19457761 19460640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1410 44 172 C3H Transcription Factor Family AT5G42200 55.474 4.11e-47 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1410 04 19457761 19460640 Lele04g1410 04 19457761 19460640 ECH
Lele01g1162 01 6915222 6915608 Lele04g1410 04 19457761 19460640 hybridization
Lele02g1429 02 18596364 18596750 Lele04g1410 04 19457761 19460640 hybridization