Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1383 ATGGAAGGTGGATCTGCCAAAACCTCCTGAGGTTTAATACCTCCCTCTCAAGCCGTTTCAAGCCCTACTCAATACTCATCCAACTTCTCTTTTCTCGAACTCGTTCTCTCTCCTGTTGGAATCCTCCTCTCCGATTCACCATCCTGTTGTTCCGCTGCAGTTTTCGACATGAAAGGCGACAAATCGAAGGCGGAATCTAAGAGGGCTGATGCCAAGCTTGCTGTCAATAGGAAGGGCGCTGCCGCCTCCAAGGCAGGCAGGAAACCAAGCAAGGGGAAAGCGGCGAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAAGAAAATCCCGACAACAAAGCAGTGTCTGCTGTTGGAAAAGCTGCTGGGGCAAAATGGAAGTCCATGTCTGAAGCTGAGAAGGCACCCTATGTAGCTAAATCAGAGAAACGAAAGGCTGAGTATGAGAAGAATATGAAAGCCTATAACAAGAGACAGGCGGAAGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAGTCAATGTCTGAGGTTAATGATGCGGAAGGAGGAGATGAAGAGGGCAGCGATGAGGGAAATTTTGATAGGGCAAACTGGCTTGTCCATCGTTCACTAAACCTTTTGGCTATGTTTGTTAACTGTGAGGAAAAAGGAGAGGGCAGTGGGGGAGGAAGGTTAAAATCATGCAAGAGAAGTGGAGTTGAGAGAAAATACACCGGTGAGAGCGTCGCTGTTGGAAAAGTGGCCAGCAGCGAAGTTTTCGACATGAAAGGTGGCAAATCGAAGGCTGAATCTAAGAAAGCCGATGCCAAGCTTGCTGTGAATAAGAAGGGCGCCGCCGCCACAAAGGCTGGCGGGAAAGCAAGCAAGGGGAAGGCGGCGAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCAGTGTCCGCTGTTGGCAAAGCTGCTGGGGCTAAATGGAAGTCCATGTCTGAAGCTGAGAAAGCACCCTATGTGGCTAAAGCAGAGAAACGAAAGGCTGATTATGAGAAGAACATGAAAGCATATAACAAGAGACAGGCGGAAGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAATCAGTTTCTGAGGTGAATGATGAAGAGGAAGGGGATGAAGAGGGCAGTGATGAGAAATGGACTATAGCGGTTACCTAG 1278 0.4781 MEGGSAKTSXGLIPPSQAVSSPTQYSSNFSFLELVLSPVGILLSDSPSCCSAAVFDMKGDKSKAESKRADAKLAVNRKGAAASKAGRKPSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSMSEVNDAEGGDEEGSDEGNFDRANWLVHRSLNLLAMFVNCEEKGEGSGGGRLKSCKRSGVERKYTGESVAVGKVASSEVFDMKGGKSKAESKKADAKLAVNKKGAAATKAGGKASKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKNMKAYNKRQAEGPNAADEEESEKSVSEVNDEEEGDEEGSDEKWTIAVT 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1383 425 MobiDBLite consensus disorder prediction 291 318 - -
Lele04g1383 425 MobiDBLite consensus disorder prediction 356 425 - -
Lele04g1383 425 MobiDBLite consensus disorder prediction 150 194 - -
Lele04g1383 425 MobiDBLite consensus disorder prediction 1 23 - -
Lele04g1383 425 SMART hmgende2 100 171 IPR009071 -
Lele04g1383 425 SMART hmgende2 313 384 IPR009071 -
Lele04g1383 425 Coils Coil 365 385 - -
Lele04g1383 425 Pfam HMG (high mobility group) box 314 383 IPR009071 -
Lele04g1383 425 Pfam HMG (high mobility group) box 101 170 IPR009071 -
Lele04g1383 425 MobiDBLite consensus disorder prediction 122 211 - -
Lele04g1383 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 270 416 IPR031061 -
Lele04g1383 425 CDD HMGB-UBF_HMG-box 314 380 - -
Lele04g1383 425 Gene3D High mobility group box domain 298 399 IPR036910 -
Lele04g1383 425 Gene3D High mobility group box domain 85 191 IPR036910 -
Lele04g1383 425 MobiDBLite consensus disorder prediction 363 399 - -
Lele04g1383 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 314 383 IPR009071 -
Lele04g1383 425 SUPERFAMILY HMG-box 301 389 IPR036910 -
Lele04g1383 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 101 170 IPR009071 -
Lele04g1383 425 CDD HMGB-UBF_HMG-box 101 167 - -
Lele04g1383 425 SUPERFAMILY HMG-box 89 176 IPR036910 -
Lele04g1383 425 Coils Coil 152 172 - -
Lele04g1383 425 MobiDBLite consensus disorder prediction 400 416 - -
Lele04g1383 425 MobiDBLite consensus disorder prediction 65 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1383 Lele-ChrLele04 19318046 19325266 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele04g1383 HMG_box 8.4e-23 CL0114