Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1371 ATGGCATACCACCAGATCCACGGTCATACGCCCACTTCTGGATCCAATTCAAGTTCTGGATTTCAACCAATAAGCTCACCTTTTGGTGATACCACTTTCACCAAGGTGTTTGTTGGAGGATTGGCTTGGGAGACCCAGAGTGAAACCATGCGCCGATACTTTGAGCAGTTTGGCGACATTCTTGAAGCTGTTGTAATCACTGATAGGAATACAGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGAAGAGCCTGCGCTGATCCAACTCCTATCATTGATGGAAGGAGGGCAAATTGTAACTTGGCTTCACTTGGACGACCGTGGCCTCCTCTGCCACATGGACGGTTAAGGCCAGCTCCTGCTTACATTGGAAATTTGCAACCAGCCCGAGGTGCCTATGTTGGAGGTTTTGGCTATCAGCAACCAACTTCTTACAGCTATCAACAAGGATTGGTTTATCCTCATTATGGGTATACGACATATGGACCTGAATATGCATACCCACAGGGTTTATACAACCCATATATGGGCCAGCAGTATGTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATACTATTTATCCTTATGGGCAGTTAGGTCAAGCTATTCCCAGTAGTCATGGTTATGCAGGAATGCAGGGCTATGCTGTAACTGGTCATCACATTGTACCGTATGGTGGAACCAATGTTAATGCCCTGACTACTTCACCTATGCCTACCATTCAAGTACCATATCCCAGTGGAATTGCGGCACCAATTCCCGGACAACCACAATTTATTGTCCCTGCGCCTTCTCAGTTTATGCAAGGTGCTGGTCCTGACCAAGCAGCTGGCAGGACTAAGAGCAGTGGATCTGCTACATGTGTGGCGGGCTTCCAATCTAGCCTTGCATGTTATATATATTGCATTCTAGAGGTTATATTTTGTCATGCTCACCATCAAATCGGGAAGAGTGGCAGTAGTATTGGATCAATGGGTGCTGGAATAGGGTTTTCCAGCAACCATATAGAGGGACCCCATCCTTACAGTCGTGTAATGGCGACGAAGTTACCGGCCGATGCTGTTGAAACGCCTCCACCGAAACAAGTTCCATCCGAGGCCTCATTTGCCGAATCCAGAGACGGTAGCCGCGCCCCCCCGGCGTCGGTTTCGGCGTCTACCGAGCTTAACGTAATCCATGTTCCCAGCCACTCCAGGTGGTTTTCATGGAATGGCATACACGAATGCGAAGTTCGGCATCTCCCTGAGTTTTTCGATTCTGCTTCGCCCTCCAAGAATCCTAGGGTTTACAAGTATTACAGGAATTCCATCGTCAAGCATTTCAGAGATAATCCTACTACAAAGATTACCTTCACCGATGTCAGGAAAACTCTTATAGGGGATGTTGGTTCCATCCGAAGGGTGTTTGATTTCCTGGAGGCATGGGGCTTGATCAATTACCAACCTTCCTCGGCGTTGACAAAGCCCCTGAAGTGGGAAGACAAGGAGACCAAGCCCGAAGCTGGATCTAATTCCAACGAATCATCAACTCCAATTCGAGAGACTTCCAGGAGAGTCTGCAGTGGTTGCAAAGCTGTCTGTACCATTGCTTGCTTTGCTTGCGATAAGTATGACTTGACTCTCTGTGCAAGATGTTATGTCCGTGGCAATTATCGAGTAGGTGTGAGCTCTTCAGATTTCAGGCGAGTAGAGATCAGTGAAGAGACCAAGACGGATTGGACAGACAAGGAAACTTTGTATCTTCTGGAGGCCATTATGCATTATGGTGATGACTGGAGAAGGGTTGCTCAGCATGTTGGTGGTCGGACTGAGAAGGACTGCATTGCCCATTTTATCAAGCTTCCATTTGGGGAGGAATTTCTAAAGTGTCAATATTCTGGTGTTAGTGATGACAAAGGTAATCAATTAAAGGAACCTGTTGATGCTGACAGTGGACTGGAAAGTATTGGTGCAGCAGAACCAAATAAAAGAATGCGTCTAACACCTCTTGCAGATGCAAGCAACCCTATAATGGCACAGGCTGCTTTCCTGTCTGCTTTAGTGGGGGCAGATGTTGCACAGGCTGCTGCTCAAGCTGCAGTGAGAACTCTGTCTGAGGTTTACAAATCAGCTAGAATAAAATTTCAGTCATTTCCAAGGAATATGTCATTGCAAGATACTGATAAGGCAGTTAATGGGGGCAGTACATCTGATTTGTTTGAATGGGCTCGGTCGCAAGCAAATGCACAGCTTGAGAAGGAGGATTCGGACTTAGAAAAAGCAATTTCTGTGATTATAGATGTTCAGATGAAGAATATCCATGACAAGCTTGTTCGTTATGAAGATTTAGACCTGCTGTTGGAGAAAGAATGCCAACAGTTGGAGCAAATGAAGAATATGCTTTACGTTGATAAGCTTACTCTTCTATTTCATAGACGGTCAACGCCAAAAACCGGAGAGCACCCGGAAGAGGATAATATTAACAAAGTTTGA 2496 0.4615 MAYHQIHGHTPTSGSNSSSGFQPISSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPWPPLPHGRLRPAPAYIGNLQPARGAYVGGFGYQQPTSYSYQQGLVYPHYGYTTYGPEYAYPQGLYNPYMGQQYVQIYGVPGAVNNTIYPYGQLGQAIPSSHGYAGMQGYAVTGHHIVPYGGTNVNALTTSPMPTIQVPYPSGIAAPIPGQPQFIVPAPSQFMQGAGPDQAAGRTKSSGSATCVAGFQSSLACYIYCILEVIFCHAHHQIGKSGSSIGSMGAGIGFSSNHIEGPHPYSRVMATKLPADAVETPPPKQVPSEASFAESRDGSRAPPASVSASTELNVIHVPSHSRWFSWNGIHECEVRHLPEFFDSASPSKNPRVYKYYRNSIVKHFRDNPTTKITFTDVRKTLIGDVGSIRRVFDFLEAWGLINYQPSSALTKPLKWEDKETKPEAGSNSNESSTPIRETSRRVCSGCKAVCTIACFACDKYDLTLCARCYVRGNYRVGVSSSDFRRVEISEETKTDWTDKETLYLLEAIMHYGDDWRRVAQHVGGRTEKDCIAHFIKLPFGEEFLKCQYSGVSDDKGNQLKEPVDADSGLESIGAAEPNKRMRLTPLADASNPIMAQAAFLSALVGADVAQAAAQAAVRTLSEVYKSARIKFQSFPRNMSLQDTDKAVNGGSTSDLFEWARSQANAQLEKEDSDLEKAISVIIDVQMKNIHDKLVRYEDLDLLLEKECQQLEQMKNMLYVDKLTLLFHRRSTPKTGEHPEEDNINKV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1371 831 ProSiteProfiles SANT domain profile. 576 627 IPR017884 -
Lele04g1371 831 FunFam SWI/SNF complex subunit SMARCC2 isoform C 576 627 - -
Lele04g1371 831 Pfam SWIRM domain 403 488 IPR007526 GO:0005515
Lele04g1371 831 MobiDBLite consensus disorder prediction 8 23 - -
Lele04g1371 831 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 92 IPR000504 GO:0003723
Lele04g1371 831 Gene3D - 4 116 IPR012677 -
Lele04g1371 831 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Lele04g1371 831 ProSiteProfiles Myb-like domain profile. 573 623 IPR001005 -
Lele04g1371 831 PANTHER BOULE-RELATED 13 248 IPR037366 -
Lele04g1371 831 Pfam Myb-like DNA-binding domain 579 622 IPR001005 -
Lele04g1371 831 Gene3D - 406 492 IPR036388 -
Lele04g1371 831 Gene3D - 576 626 - -
Lele04g1371 831 ProSiteProfiles SWIRM domain profile. 400 497 IPR007526 GO:0005515
Lele04g1371 831 SUPERFAMILY Homeodomain-like 397 498 IPR009057 -
Lele04g1371 831 SUPERFAMILY Homeodomain-like 577 625 IPR009057 -
Lele04g1371 831 SUPERFAMILY RNA-binding domain, RBD 10 120 IPR035979 GO:0003676
Lele04g1371 831 MobiDBLite consensus disorder prediction 1 23 - -
Lele04g1371 831 FunFam SWI/SNF complex subunit SMARCC2 isoform c 406 493 - -
Lele04g1371 831 CDD SANT 581 622 IPR001005 -
Lele04g1371 831 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 578 626 IPR017930 -
Lele04g1371 831 CDD RRM_RBM24_RBM38_like 34 109 - -
Lele04g1371 831 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 114 - -
Lele04g1371 831 Pfam SWIRM-associated region 1 747 815 IPR032451 -
Lele04g1371 831 SMART rrm1_1 35 107 IPR000504 GO:0003723
Lele04g1371 831 SMART sant 577 625 IPR001005 -
Lele04g1371 831 MobiDBLite consensus disorder prediction 362 391 - -
Lele04g1371 831 Coils Coil 781 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1371 Lele-ChrLele04 19235784 19244151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1371 24 216 C2H2 Transcription Factor Family AT2G19380 27.451 3.49e-15 77.8