Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1353 ATGTCTTTCTCTCTCTTTGAAGCGTGTAGGAAGAGAAAGAGGTGGCCCAAGGTTTTCAGGTTTCATTCTTTCGGCGACCCTGGTTGCCCCATCAGTCCTAACGGACCTTTCAGAGATAATATTCGTCTATTTCTTCAAGAATGTGGAGAGCTTGAAGATTTCCAAATCCAGAGCATGCCTCTATGGACCACCTTCCTTATTCAAGAGAAATCAAACTCTATGACCCCCCTTTACACCGTTGAAGAGAATGTCTACCACTCTACGCACTCCTTCTGCGAGCATTGCCGATGTGCAGGCTGGAGCGGCCATTTTGTATCGAAGAGAAGGTACCATTTCATAATCACCGCCGATAATAAACCGTTGACTGAAGGTTTCCTTGATAATCAGAGTCATCTCTTGCATGGAATGATTCACTGTAACGGGTACGGCCATTTGCTCTGTGTTAATGGCATTGAAGGGGGTTCTAAATTTCTCAGTGGCAGAGAAATCATGGATCTGTGGGACAGGATCTGTACAATTCTTCGAACAAGGAAAATTGCAATTGAAGATACATCAAAGAAGCGTTTAATGGATCTTCGCCTACTTCATGGAGTTGCTTATGGCCATTCTTGGTTTGGCAGGTGGGGTTACAGATTTTCTCGTGGAAGCTTCGGTGTCACAGAGCACAATTATAATGCAGCAATCGAAGATCTAAGTTCGTTAGAGCTTGATGAAATTGTTCGATTTTTTGGTAATACAATGTGCCATAAAGAAATCAAACAAATAATTCTCCACTATAGAGACATGAGTGAAACCCAGTTGATTACAATCAAGGATCTTCTCAGGTTTATGCTTACTGTCAAGTCTCGAACTATTCCACCACCCAGAAGACTAGTAGTCAATATCAGTACCGCTCCTCCTTCTTCAACCTTCTGTTCTAAAAGCTCAACGAGATTTGCAATGTCAAGCAAACAAAATCCATTAAAGGGAAAATCAGTGAGGTACAAAAAGTTCAGTTCTGCAGTGGCTAATATGGATAGTAGGTGGCCTTCAAGGAGACTAGAATATGCAGCCCAAGTGATAGTAGATGCATTGAAAGAAAACAAAGCAAATAGTTCAGGTTCTGGTGGGATGACTAGGCAAGATGTAAGAGATGCAGCCAGGCTTCACATCGGTGACACAGGCTTGCTGGATTATGTGCTGAAATCACTGAATAATATGATTGTTGGAAACTACGTTGTCCGTCGAATGGTCAACCCGACAAGTCGAATCCTAGAGTATAACATTCATGAGCTGGGAAATGGGTCTAAATCCCCTGAAGTAAGTCCTGGGCTGAAGGTTTTTAATTATATGGAGCCACCAGCAGAATCAGAACAAGTGCCAGGAGTTGATGTTTACAGTGATGTAGCTTATCTGTACAAGAATGTCCTATTGAGCTACCCAGAATCAGAACAAGTGGACTTGGCGGTTCAAACAATTCTAGACAGTAGGCATTTTGTGAAGGAATGGCCATTAATTGATGAAATAGAGCAAGTTTTGACATTCATATGCCGCTTGATACCCAACTTGGTTGATGATAAACCAGAGAGGAACAAGGAAGTAACCCCAGGTGAGATAGTGATGGTTCCATTGCATGCAACAGTTGGAGACTTGAAGCAAGCAGCTGAGACTGCTCTGAGGGATACTTATTGTATTGCAGAGAGAATCATGGTGATAGAGATTGCAGAGTTGGCGGGAATAAGTGATGAGGAAGTGCTTTTTGGAGTGGTGGAGTCTGGTATGGATCTGCGTGTGAGGGGAATTGGTTTAGATTTGATTACTCCATTGAAGTACCAGGGAGGATCAGACAATTGGAAGGTGAGATGTGATTGTGGAGCTCAAGATGATGATGGTGAGAGAATGGTGGCATGTGACATGTGTGAGCTGTGGCAGCACACACGGTGCTGTGGGATAGATGACTCAGAGACTGTGCCGCCATTGTTTGTGTGCTCTGCTTGTTGTGATTCACTTGTACCTCCAAGGGTTGATTCTGCCTTTAGCAGCAACAATAGCGTGGACTGTGCTGATGATTATCTGATTTCCACAGAGCCTAATAACTATCTTGAATATGGTTATGGATACTGA 2103 0.4313 MSFSLFEACRKRKRWPKVFRFHSFGDPGCPISPNGPFRDNIRLFLQECGELEDFQIQSMPLWTTFLIQEKSNSMTPLYTVEENVYHSTHSFCEHCRCAGWSGHFVSKRRYHFIITADNKPLTEGFLDNQSHLLHGMIHCNGYGHLLCVNGIEGGSKFLSGREIMDLWDRICTILRTRKIAIEDTSKKRLMDLRLLHGVAYGHSWFGRWGYRFSRGSFGVTEHNYNAAIEDLSSLELDEIVRFFGNTMCHKEIKQIILHYRDMSETQLITIKDLLRFMLTVKSRTIPPPRRLVVNISTAPPSSTFCSKSSTRFAMSSKQNPLKGKSVRYKKFSSAVANMDSRWPSRRLEYAAQVIVDALKENKANSSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNMIVGNYVVRRMVNPTSRILEYNIHELGNGSKSPEVSPGLKVFNYMEPPAESEQVPGVDVYSDVAYLYKNVLLSYPESEQVDLAVQTILDSRHFVKEWPLIDEIEQVLTFICRLIPNLVDDKPERNKEVTPGEIVMVPLHATVGDLKQAAETALRDTYCIAERIMVIEIAELAGISDEEVLFGVVESGMDLRVRGIGLDLITPLKYQGGSDNWKVRCDCGAQDDDGERMVACDMCELWQHTRCCGIDDSETVPPLFVCSACCDSLVPPRVDSAFSSNNSVDCADDYLISTEPNNYLEYGYGY 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1353 700 ProSitePatterns Zinc finger PHD-type signature. 615 659 IPR019786 -
Lele04g1353 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 663 IPR013083 -
Lele04g1353 700 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 668 - -
Lele04g1353 700 SUPERFAMILY FYVE/PHD zinc finger 600 663 IPR011011 -
Lele04g1353 700 SMART PHD_3 614 660 IPR001965 -
Lele04g1353 700 CDD PHD_MMD1_like 615 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1353 Lele-ChrLele04 19080132 19082537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1353 10 665 PHD Transcription Factor Family AT5G22260 33.946 5.04e-118 367