Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1351 ATGACTAGAAAGAAGGTGAAGCTCGCGTTCATTGCAAACGATTCTACAAGAAAAGCCACTTACAAGAAAAGAAAGAAGGGTCTGATCAAGAAGATCGGCGAACTCACCACTCTCTGCGGAATCGAGGCCTGTGCGATTGTCTACAGTCCGTATGATTCTCAGCCGGAGGTTTGGCCGTCGCCGTTCGGAGTTCAACGTGTGCTGTCGAAGTTCCGGAGGATGCCGGAGCTGGAGCAGAGTAAGAAGATGGTGAACCAGGAAGGGTTTCTGAAGCAAAGGATTCTGAAAGCGAAGGAGCAGTTGAAGAAGCAGAGGAAGGATAATAGAGAGAAGGAGATGACTCAGATCATGTATCAGTATCTGAGTGCAGGGAAGGTTCTTCATAACATGACGATGATCGATCTCAACGATTTGGCGTGGCTAGTCGAGCAGAATCTGAAGGACGTTAATCGGAGGATCGAGACGCTGGACAAGAGGGCTCAGAGTCAGAGGGCGGCCAACGTGGGGGCCATGGCAGCGGCTGATGCGGCGGAGAGGATCCGAGATAAGGCGAAGGCGGAGCAGGTGGATGGGAATGGGGTGGAGGTGGCCGGCGGCGGGGACGCCATGCCGAAGCAGCAGTGGTACATGGGTATGATGCATGGTGGTGCTGATGAAACGCTGCCATTTGGAGATGTGAGCCATTCCCATGCGTTTTGGCATGATCACTATTTCCCTTGA 720 0.5278 MTRKKVKLAFIANDSTRKATYKKRKKGLIKKIGELTTLCGIEACAIVYSPYDSQPEVWPSPFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQIMYQYLSAGKVLHNMTMIDLNDLAWLVEQNLKDVNRRIETLDKRAQSQRAANVGAMAAADAAERIRDKAKAEQVDGNGVEVAGGGDAMPKQQWYMGMMHGGADETLPFGDVSHSHAFWHDHYFP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1351 239 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele04g1351 239 Coils Coil 91 114 - -
Lele04g1351 239 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lele04g1351 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele04g1351 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele04g1351 239 PANTHER MADS BOX PROTEIN 3 150 - -
Lele04g1351 239 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele04g1351 239 Coils Coil 146 166 - -
Lele04g1351 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele04g1351 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele04g1351 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele04g1351 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lele04g1351 239 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1351 Lele-ChrLele04 19071503 19072222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1351 1 175 Type I MADS-box Gene Family AT5G48670 61.714 3.14e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele04g1351 SRF-TF 7.8e-16 No_clan