Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1350 ATGGTGTTGTCTTGGTCCAGAAGAAGAGTTTTCCGCCGTGCCCGCAAAGGAGACGACCTTCCCGGCGCCGGAGACTTGGACGTCGATGTCGAGGTTGTTGTTCCGACCCACTTCCGGTGTCCGATTACTCTCGACTTGATGACAGATCCGGTGACTTTATCCACCGGAATCACCTACGACAGGGACAGCATCGAGAAGTGGGTGGAATCTGGTAACCGGACTTGCCCCGTCACCCAACAGCCTTTGAACGGCTTCGACGTGATTCCTAACCACGCCATACGTAAGATGATCCAAGAATGGTGCGTCCAGCATCGTTCCCACGGCATCGAGAGAATCCCCACCCCGAGAATCCCGGTTACTCAGGACGAGGTTTCCGACATCTGTACGAAAATAATGTCGGCAACACAACGTGGGGACGACAACAAGTGCCAACAGTTTGTGGATAAGATCAAGATTTGGGGCAGAGAGAGCGAGAGGAACAAGAAGTGCATAGTTCAAAACGGAGCTGCCGCCACTGCATTAGCCAACGCCTTCAGTTCTTTCTCAAACGCTTCGATTGAGAAAAACGTTGGCCTTTTAGAGGATCTTCTGGGGATTTTATCATGGATTCTTCCGAAGAAACAAGATGTTAATTATACACAATCAATGTTGAGTTCTGAAGCGTCTTTACGTTGCATGGTTTGGTTCCTCAACAGCAAAGATCTCTCATCAAGGCAAAACGCAGCTTTGGTGCTGAAGCAAGTTCCTATAGAGCCATTAGCAAAAACTGAAGGTGTGATCGAAGCTTTAGTGAAGATGATCAAGGAGCCAGTAGGTCCTTCTGCAACAAAAGCAAGCCTGAAAGCATTTTTCCAGATGGTTTCCTCGTCAAACGAGAAAGAGAGAATCATCAAAACATGTGTGGAATTTGGTCTGGTTACGTTGTTGCTTGAAGCCATAGTGGACGGAGATAGAGGGATAAGTGAGAAGGCTTTGGGAGTGTTGGATTGTATATGTGATTACAACGAAGGAAAAGAAGTGGCTAAGGCCAATGTTCTAACTTTGCCTCTTGTAGTGAAGAAGATATTGAGGGTTTCAGGGTTGGCTTCTGATTTTGGAGTTTCTATTCTTTGGAAACTTTGTGATAAGATGGATGAAGACATGGTGAAGGAGGCAGTTCAAGTGGGAGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGAAGAGAACACGAAAGGAAAGGCCACTGATTTGTTGAAGTTGCTCAATGCTTATAAGAACTCAGTGGAGTGTGTTGATTCGTCTTTAGATTTCAAGTACGTTAAGAGGCCCTTTTGA 1323 0.4649 MVLSWSRRRVFRRARKGDDLPGAGDLDVDVEVVVPTHFRCPITLDLMTDPVTLSTGITYDRDSIEKWVESGNRTCPVTQQPLNGFDVIPNHAIRKMIQEWCVQHRSHGIERIPTPRIPVTQDEVSDICTKIMSATQRGDDNKCQQFVDKIKIWGRESERNKKCIVQNGAAATALANAFSSFSNASIEKNVGLLEDLLGILSWILPKKQDVNYTQSMLSSEASLRCMVWFLNSKDLSSRQNAALVLKQVPIEPLAKTEGVIEALVKMIKEPVGPSATKASLKAFFQMVSSSNEKERIIKTCVEFGLVTLLLEAIVDGDRGISEKALGVLDCICDYNEGKEVAKANVLTLPLVVKKILRVSGLASDFGVSILWKLCDKMDEDMVKEAVQVGAFQKVLVLLQVGCEENTKGKATDLLKLLNAYKNSVECVDSSLDFKYVKRPF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1350 440 SUPERFAMILY ARM repeat 156 414 IPR016024 -
Lele04g1350 440 ProSiteProfiles U-box domain profile. 33 107 IPR003613 GO:0004842|GO:0016567
Lele04g1350 440 Gene3D - 127 430 IPR011989 -
Lele04g1350 440 CDD RING-Ubox_PUB 38 80 IPR045210 -
Lele04g1350 440 SMART Ubox_2 37 100 IPR003613 GO:0004842|GO:0016567
Lele04g1350 440 Pfam U-box domain 34 105 IPR003613 GO:0004842|GO:0016567
Lele04g1350 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 111 IPR013083 -
Lele04g1350 440 SUPERFAMILY RING/U-box 32 110 - -
Lele04g1350 440 FunFam RING-type E3 ubiquitin transferase 34 105 - -
Lele04g1350 440 PANTHER WDSAM1 PROTEIN 32 422 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1350 Lele-ChrLele04 19068124 19069446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1350 31 440 U-box Gene Family AT5G37490 47.242 1.67e-117 348