Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1334 ATGTCTAGACCAGTTGATAGGAAATTCAGTCTAAAAGGGGTTTTCTTCTCTGTCACTGACAAAGTAAAGCTTTTGATGGGCATGTCATCTGGCTCCAACATCAAGCAGCAATCTTCTTCTAAAATGCTACCTCCACGTCAGCAATCTCATGTTGGAGGACTGCAAACTTCACTATCCCTAATTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAACATTCGAGAATCTCCTACTGAAAGTGCCAGTTCACGAGAAACTTGGCCCACTGCTGAAGGTATTGAAGGAAAGAAGATGGAGAACGGGAAGGCTGAGAATGATCGTCCTGAGCAGTCAGTCATCCGTCGTGTTTCTAGTGCTGACAAAATCACTCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTCTAGAAGAGCTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGAGAAGAATTTTTCATTTTGCAGAGGCTTGTCCAAAGTAGAACTGATTTAACAGCTAAGACTTTGATTAGAGCACATCGTGTGCAGGTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGCCTTTCACAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAACAGAAATGGTTTCTGCAACCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGATGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGACCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCTGGACTAAGTGAAATGGTTTTCAGGTGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAGGATGTTTTTCAGCATTGTGCGCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGCAGGATCTTTAACGGTAGTAAAGACCCCAGAGGGAGGAAACTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAGTGGAACAGTGGAACCGAATGCTGCCTGCCGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGATGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATCAGAAAAATGGAAGTTGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGGTTGTGATCGAGAATTAGCAGATAAGGCGAGGGAAGCAGCAGAACTAAAGATGGACAGGCAAAAAAAGAAATTGCAGATAGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCGAAACAAGAGGCCGAGAGGCTCCAGAGAATTGCTCTAGCCAAATCAGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAATGAGGCTGAAGCTGAGAAGCAATACCTCTATGAGAAGATCAAATTGCAGGAGAGTTCTCATGCTTCGCAGAGTAGTAGTGGCGGTGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAAGGCAGATAGTCAGCCTAATGAACGTCACCCGTTCCGAACAAATCCATGA 1827 0.4362 MSRPVDRKFSLKGVFFSVTDKVKLLMGMSSGSNIKQQSSSKMLPPRQQSHVGGLQTSLSLISSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEGIEGKKMENGKAENDRPEQSVIRRVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFILQRLVQSRTDLTAKTLIRAHRVQVEILVAINTGIQAFLHPNISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGLSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFNGSKDPRGRKLFWKCDDLKEKMKSGTVEPNAACRAILMFFQELEVDSPKSLENGESGRMIAPQDACNRIAEVVQEAIRKMEVVADEKMRMFKKARLALEGCDRELADKAREAAELKMDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKQEAERLQRIALAKSDKSEEEYTSNYLKQRLNEAEAEKQYLYEKIKLQESSHASQSSSGGDPSQMLMYSKIHDLLYSVPPKADSQPNERHPFRTNP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1334 608 Coils Coil 460 529 - -
Lele04g1334 608 MobiDBLite consensus disorder prediction 32 117 - -
Lele04g1334 608 CDD PHD_OBE1_like 266 325 - -
Lele04g1334 608 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 45 589 IPR004082 -
Lele04g1334 608 MobiDBLite consensus disorder prediction 96 117 - -
Lele04g1334 608 Pfam PHD - plant homeodomain finger protein 236 359 IPR032881 -
Lele04g1334 608 MobiDBLite consensus disorder prediction 589 608 - -
Lele04g1334 608 Pfam Coiled-coil region of Oberon 454 587 IPR032535 -
Lele04g1334 608 PIRSF UCP025218 28 594 IPR004082 -
Lele04g1334 608 MobiDBLite consensus disorder prediction 32 64 - -
Lele04g1334 608 MobiDBLite consensus disorder prediction 79 93 - -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 365 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 227 248 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 528 550 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 201 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 273 293 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 489 509 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 201 216 IPR004082 -
Lele04g1334 608 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 144 166 IPR004082 -
Lele04g1334 608 SMART PHD_3 266 326 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1334 Lele-ChrLele04 18951834 18956260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1334 236 338 PHD Gene Family AT5G57380 31.731 6.36e-09 57.0