Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1297 ATGGAGGTGCTAAAAACCGAAAAACTAGGGTTTGGTGGAGCATTCGTCTCGGTATCGATAGAGCTAGAGAAGAAAAGGGCCCCTGCTAGCATTCATCTTGACAGTGCCTTGGAACCATTACTTATGGCTGAACCAGAAGGCAAGCGCCATGCTTCCCTTGAGGAAGGGAAGAAGATGAAGAGGAAGAGGAATATACCACGGAAATCTGCAACTGAGAAGCAGTTGGAACCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGCGAAGAAGCTAGAGAGAATGATGGGGATAAGGAGTCTGCTGAGTTGCGCAAGAAAAAGAACGATAAAAAGGTGAAGCGCGGTGAAGGAGTAAGTGAAGGGGAAAATGGCGGCGGTGAAAATGAGGAGGAGGAGGGCGAACAAAGGAAGTTAAAGAATGCTGGGTCTGGAATTATGAGCACTGTGTCGTTTGATTCTCTGGAATTATCTGAACCTACTTTTAAGGCCATTAAGGACATGGGATTCGAGCATACGACTCAGATTCAAGCGAGAGCAATCCCACCACTTTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCGCGAAATGGAACTGGTGTCGTTGTCATATGTCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCTAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACTAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCTTTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAGAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTACATACAGATTGATTGTTATAATATACATGGAAAACAAAAGCAGCAAACACGTACAACTACCTTCTTTAACTTCTGTAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCGGCCCGTGGACTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGTAAAGGAAATGCTTTGCTTTTCCTGATTGCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCAAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGCTGTCAAATGTACAATCTCACCTGGAAAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTCGATTTACAGGCGTTGGCAGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGCAGTGCTTCAAAGCATAGGAAGACAATGCGTAAGGTTGAAGGAGGCAGACGTGGATTCAGCGACAGCAATCCTTACGGTAACAAAATTGCTGCAGATGATAACCTCCAATTTGTGAGGTATTAG 1917 0.4262 MEVLKTEKLGFGGAFVSVSIELEKKRAPASIHLDSALEPLLMAEPEGKRHASLEEGKKMKRKRNIPRKSATEKQLEPQESNQHGEEEGEEARENDGDKESAELRKKKNDKKVKRGEGVSEGENGGGENEEEEGEQRKLKNAGSGIMSTVSFDSLELSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIAEELQFLRYLKAAKVPVKEYLFDEKKLSNVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQALAASFCFSNPPKVSLGIDSSASKHRKTMRKVEGGRRGFSDSNPYGNKIAADDNLQFVRY 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1297 638 Gene3D - 127 361 IPR027417 -
Lele04g1297 638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 355 IPR014001 -
Lele04g1297 638 Pfam DEAD/DEAH box helicase 173 344 IPR011545 GO:0003676|GO:0005524
Lele04g1297 638 CDD DEADc_DDX18 160 357 IPR044773 GO:0003724|GO:0005524
Lele04g1297 638 CDD SF2_C_DEAD 370 501 - -
Lele04g1297 638 MobiDBLite consensus disorder prediction 38 141 - -
Lele04g1297 638 SMART ultradead3 168 373 IPR014001 -
Lele04g1297 638 MobiDBLite consensus disorder prediction 68 106 - -
Lele04g1297 638 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Lele04g1297 638 Gene3D - 366 607 IPR027417 -
Lele04g1297 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 502 IPR027417 -
Lele04g1297 638 MobiDBLite consensus disorder prediction 43 60 - -
Lele04g1297 638 Pfam Domain of unknown function (DUF4217) 532 592 IPR025313 -
Lele04g1297 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 356 IPR027417 -
Lele04g1297 638 SMART DUF4217_3 531 594 IPR025313 -
Lele04g1297 638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 540 IPR001650 -
Lele04g1297 638 Pfam Helicase conserved C-terminal domain 385 490 IPR001650 -
Lele04g1297 638 SMART helicmild6 410 491 IPR001650 -
Lele04g1297 638 PANTHER RNA HELICASE 99 533 - -
Lele04g1297 638 FunFam RNA helicase 366 597 - -
Lele04g1297 638 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 301 309 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1297 Lele-ChrLele04 18538047 18544974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1297 150 509 Eukaryotic Initiation Factors Gene Family AT3G13920 30.471 3.63e-45 164