Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1281 ATGGGAAATAATATAGTTATCCGTATTCCTTTATTTTCCGCATCGATAAATACCCTGGATCTCCCTCCAGCATTCCCATTAGCTGCTTTTCACTCTGAGCGTGAGATCGAAGTAGCCCTTGACAACGACGAAAGAGTGATGCAGGGAGCCGCAGCCGACGGAGAGGCGGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGAAGATGGCGGTGCCGACCCCGACGCCTCTGCATCTCCCCATGCTCCTCCTCTCCCGAAGCTCAAATCTGCCATCACTGGTGGCGCTTCTTCCTCACTCGCCGGCCCTAAAAAGACCAAAGGCCGAGGCTTTCGTCAGGAAACCGATGCCAATCGTAACACCGGCCTTTCTGGGTCCGATTTCGACTCCCTCGCCACCGAGGGTGGGCCCGGTCCTCAACGATCGATTGAAGGATGGATTATTCTGGTCACGGGAGTGCATGAGGAAGCACAGGAGGATGATCTACAAAATGCATTTGGTGAATATGGAGAGATTAAAAATCTACATTTAAATCTTGATCGTCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATATGAGCATGCTGAAGAGGCCCGGAACGCAATAGAGAATTTGAATGGATCTGAACTTCTTACTCAAGCCATTTATGTGGACTGGGCTTTTAGCAGTGGACCTATTAATGGGTCAATGAGAAGAAAGAATGCTAGGGCGACACGGGAACGACGCTCGAGGAGCCCTCGGAGGAGATATTGA 762 0.5052 MGNNIVIRIPLFSASINTLDLPPAFPLAAFHSEREIEVALDNDERVMQGAAADGEAVDFEPEDDDLMDEDGGADPDASASPHAPPLPKLKSAITGGASSSLAGPKKTKGRGFRQETDANRNTGLSGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQAIYVDWAFSSGPINGSMRRKNARATRERRSRSPRRRY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1281 253 SUPERFAMILY RNA-binding domain, RBD 140 251 IPR035979 GO:0003676
Lele04g1281 253 FunFam RNA-binding protein 8A-like 77 243 - -
Lele04g1281 253 PANTHER RNA-BINDING PROTEIN 8A 53 252 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele04g1281 253 Gene3D - 96 238 IPR012677 -
Lele04g1281 253 SMART rrm1_1 148 221 IPR000504 GO:0003723
Lele04g1281 253 MobiDBLite consensus disorder prediction 232 253 - -
Lele04g1281 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 217 IPR000504 GO:0003723
Lele04g1281 253 MobiDBLite consensus disorder prediction 238 253 - -
Lele04g1281 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723
Lele04g1281 253 MobiDBLite consensus disorder prediction 56 72 - -
Lele04g1281 253 MobiDBLite consensus disorder prediction 53 140 - -
Lele04g1281 253 CDD RRM_RBM8 141 228 IPR033744 GO:0003729
Lele04g1281 253 PRINTS RNA binding motif protein 8 family signature 212 224 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele04g1281 253 PRINTS RNA binding motif protein 8 family signature 138 152 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele04g1281 253 PRINTS RNA binding motif protein 8 family signature 101 113 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele04g1281 253 PRINTS RNA binding motif protein 8 family signature 194 210 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1281 Lele-ChrLele04 18281756 18285465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1281 149 223 Eukaryotic Initiation Factors Gene Family AT4G34110 37.333 2.50e-08 52.4