Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1244 ATGAGCATTGTTCCAAGAACCCCTTTGATCTCTCTTCTCTATTTGTTCTTCCTGCCTAAACTTCTCAATGCATCAACACACGAACTTGAAATTCTTGTATATATGTACTGTTCAATAGCTGCCAGAAAAAAAAATGATGAAATGTCGTTTCGGAATATAGATGGTTGGGGTATGAGAATGTGTATTGTTTATCAAAACAATGCCTTGCTGGATGCAGTTCTTAATTTTTGTGTAAAATTAGCTGTGGAAAGCATTTATCCGTCAATTTTTATGATTGCGCAAGAGAAAGACCAGAAGGAAGCAGTGGCAGTGTCATCTCTTCTAAGACGAACCTCTTCCATTGTATGTGTTGGACCTTGCAACAACAAATTCTGCAAAATGCTCAGTGTGCGTGGTTCTTTTGGAATTGTTTCTGATGTTGTTTACCAGCTTCGCCGAACTTTATTCCTTCATGGCGTACGAGCGCAATATATAAACATAGGAGGTGGTGTTGGAGGGGAGATCCCTGACAACAAGCGCCTTCAGTATGCCTTGCAGCACGTACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTTGAGAACAAATTTGTCAAGGACCTAAGTAAGAGAGAGTTATATTCCCTTCGAGAATTACTTTCCAAGTACTTGCTCGGAAATGACTTGAAAAGGTGTGTTGAGAAAGATATAGAAAGGTTGGTCAGTATTCAGTGCTACAGGGGTTTCAGACACGTGGATGGGTTACCCTGCCGAGGACAACGGACACATACGAATGCTCGCACCAGGAAGAGCAGGCCAGGTTTTGCTGCATCAAGATCTGCTCAATAG 843 0.4223 MSIVPRTPLISLLYLFFLPKLLNASTHELEILVYMYCSIAARKKNDEMSFRNIDGWGMRMCIVYQNNALLDAVLNFCVKLAVESIYPSIFMIAQEKDQKEAVAVSSLLRRTSSIVCVGPCNNKFCKMLSVRGSFGIVSDVVYQLRRTLFLHGVRAQYINIGGGVGGEIPDNKRLQYALQHVHGIGRSKAHHIVCELGVENKFVKDLSKRELYSLRELLSKYLLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFAASRSAQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1244 280 SUPERFAMILY S13-like H2TH domain 165 269 IPR010979 GO:0003676
Lele04g1244 280 Gene3D 30s ribosomal protein s13, domain 2 229 268 IPR027437 -
Lele04g1244 280 ProSiteProfiles Ribosomal protein S13 family profile. 164 269 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele04g1244 280 Gene3D - 164 228 - -
Lele04g1244 280 Pfam Ribosomal protein S13/S18 165 266 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele04g1244 280 FunFam Ribosomal protein S13 229 268 - -
Lele04g1244 280 ProSitePatterns Ribosomal protein S13 signature. 245 258 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele04g1244 280 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 133 268 - -
Lele04g1244 280 MobiDBLite consensus disorder prediction 256 280 - -
Lele04g1244 280 Hamap 30S ribosomal protein S13 [rpsM]. 157 276 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1244 Lele-ChrLele04 17797221 17799613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1244 149 269 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.276 1.26e-06 45.4