Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1242 ATGGTGTATTGCCGTTCCGATGCTGCATGCTTGTGTTTGTCATGCGATCGAAATGTTCATTCCGCTAATGCCCTTTCAAGACGCCATTCAAGGACCTTAGTATGTGAGAGATGCAATTCACAACCTGCCCATGTAAGGTGTACCGAAGAGAGGATTTCAATATGTCAGAATTGTGATTGGGTGGGTCACAGTGCTTCCACGTCTTTGTCAACACATAAGAGGCAAACAATCAAGTGCTATTCGGGTTGCCCCTCGGCTGTGGAACTTTCTTCAATATGGTCATTTGTCTTGGACATTCCAACCATTGGTGAATCTTCATGCGAGCAAGAACTAGGTATGATGAGTATTAATGAGAACAGCAACAGGAGTGCTTGGGTCCCCTCAGAAAGTCAGAATGCATCTGGTTCAGCTCAAGTAATTGATATACGTGGCATGGATAAGCCTTGTGTCGGGCCATCTTCAATGCCTGAGTCGAGCTCAGAGCATCGTACTCTAGAGCATCCAAATGGACCTGCCAATGAAAGTCTATCCAAGTTATACTGCCCCGGTACAAAAGGTTCTGGACCATATGAAGATGATGATAACCTGTTTGGTGACTTCGACATGGATGAAGTGGATCTGAATCTTGAGAACTATGAGGAACTTTTTGGTGTGGCTCTTAGTAATTCTGAAGATCTTTTTGAAAATGGCGGGATCGATAGTTTGTTTGGAACAAAGGAAATGTCTGCCGGTGATTCCAACCATCAGGCTGCTGCTGAGGGGTCAGTTGGACTGGTCAACACAGCGCATCCAGCATGCAGCAATGCAGCATCTGCAGATTCCATGTTAAGTACGAAAACGGAACCTATTCCCCGTTTTACTGGAAAGCAATCGCAATCAAACCTTTCATTTTCCGGTGTTACTGGAGAGAGTAGTGGTGCTGACTATCAAGATTGCGGTGCTTCTTCAATGCTTCTCACAGGGGAGCCTCCATGGTGCCCTCCATGGCCCGAAAATTCCATGAAAACTTCCAACCGCAGTGATGCTGTCATGCGTTACAAAGAAAAGAAGAAGGCACGCAAGTTTGACAAAAGAGTGAGGTATGCCTCTCGCAAGGCAAGGGCCGATGTTCGAAGGCGTGTGAAGGGCCGGTTTGTTAAAGCCGGCGAAGCCTATGATTACGATCCTTTGAATCAAACCAGAAGCTGCTGA 1191 0.4635 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAHVRCTEERISICQNCDWVGHSASTSLSTHKRQTIKCYSGCPSAVELSSIWSFVLDIPTIGESSCEQELGMMSINENSNRSAWVPSESQNASGSAQVIDIRGMDKPCVGPSSMPESSSEHRTLEHPNGPANESLSKLYCPGTKGSGPYEDDDNLFGDFDMDEVDLNLENYEELFGVALSNSEDLFENGGIDSLFGTKEMSAGDSNHQAAAEGSVGLVNTAHPACSNAASADSMLSTKTEPIPRFTGKQSQSNLSFSGVTGESSGADYQDCGASSMLLTGEPPWCPPWPENSMKTSNRSDAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLNQTRSC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1242 396 SMART bboxneu5 1 34 IPR000315 GO:0008270
Lele04g1242 396 SMART bboxneu5 35 77 IPR000315 GO:0008270
Lele04g1242 396 CDD Bbox1_BBX-like 34 77 - -
Lele04g1242 396 Pfam CCT motif 339 381 IPR010402 GO:0005515
Lele04g1242 396 ProSiteProfiles Zinc finger B-box type profile. 30 77 IPR000315 GO:0008270
Lele04g1242 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 384 - -
Lele04g1242 396 MobiDBLite consensus disorder prediction 150 176 - -
Lele04g1242 396 ProSiteProfiles CCT domain profile. 339 381 IPR010402 GO:0005515
Lele04g1242 396 CDD Bbox1_BBX-like 2 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1242 Lele-ChrLele04 17766997 17770399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1242 1 395 C2C2-CO-like Transcription Factor Family AT3G07650 57.843 1.78e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele04g1242 zf-B_box 4e-05 No_clan