Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1184 ATGGAATCAATTGAAAGTTCGCGTTCCGTCGAATTAATGGAAGACGTTGAGTCCGATGAGCCCGAAAAGAAGAGGGGGCATTTGAGTTCAGTATGCTCCCCCGTGGCGCGGAATTCAAACAACCCATCAACCAACAACAAATGTGCTGATGTGGGAGTCTTGCAGTTTCAGAACCAGCAGCTTGTTCAACAGATAGACCTCCAAAAACAGGCATTGCATGACCTTGAAGTAAAAATCGGAGATTTAAAATACAGGCAAAATTCATATGATAACATGATAATTGCAGTAAACGAACTCTGGAGTCAGTTGGTTGATGATCTGATCCTTCTTGGAATACGAGCTGGGGGAGGCCAAAATGCATTTAAAAATTTGGAGCACCCTGGTAATTCTCGAGATTCACTTTCTTTGTGTTCGGTTGAGGATATCTTCCTTTCCAGATTAATACAGAAAGGTTTCATTGAAACCAACAATCACAATGAGGTCATTAACTTTGTTGTGGAAGCACTTGCTCAGCGTCAGTCATCTACAAGGGAGTTATTGAAAATTCTTGATGATACCATTGATGCTCAGATTGAAAGAACTTACTGTATTACCCAGGGTTTGGAAGGGTCAACTTCAGAAGATGCTATCATTCTAATGTCTAAGATTGATGATATAATGAAAGAGGAGGCAAACAATTTACGTGAAGTAATTGATGCTCTCCATGTCAAGCATAAAGATTATGCTGTTGCTAATGAAAATTATGTCAGCTGCCAGTTACAGGATCAATCTGAGATTAAACGCATAGCAGGTGAACTTGATGAAAGCATGGCTGAACTTGAAGAGAGTAGGAGAAAATTAGTCAATCTGAAAATGCAGAAAGATGCAGCAATAGGGATGCAGTCACCTGGTTCAGAAGCTGTTAATGGGACCTTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTGCGCGAGTTGAAAGATTCAATTGAGGAAGCAAAGATAGTGGCCACTGACCGGCTTTCAGAGCTTCAAGAAGCACAGGAAGACAATCTGACCTTGAGGGGGCATTTGCAAGATCTTCAGAATGAATTGACTGATGACAAGTATGTATGTTCATCCCGACTATATTCTTTGGTGAATGATCAACTTCAACATTGGAATACTGAATTGGAGCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGAGTCCATGTCATGAAATGGGAAAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCTTGCAGTTGACAATTCTGACTGTAGGATTAAAGAGCTAGAGCTTCAGTTGCAAAAGTGTACTATTGAAAATAACGATATTGAAATAGAGATGGAAGAAGCTATACAGGATACTGGGAGAAAAGATATTAATTCTGAGTTTCATGTCATGGCTTCTGCCTTATCTAAGGAAATGGGTATGATGGAAGCTCAATTGAAACGATGGAAGAATGCAGCTCACGAGGCAGTTTCCTTACGTGAGAAAGCACATTCACTAAGATCTTTGTTAAGTGGGAAGACAAGTGAAATCAAAAGCTTAGCAAACAAATGTTCTGAGCAGGCTGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAAGCTGCAGAAGGAAAAAATGGAATTACAATTCTTTCTGGATTTGCATGGACAGGAGAATCATGAAAAAAGAGGTTTGGTAGAAATCAGAGAATCAGAAAGTAAAGCTCTCGCTCAAGCTGAAGTACTGAAAGATGCTTTAGATGAGCATAGTTTAGAGTTGAGGGTAAAAGCTGCCAATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTCTGCAGCAGAAGCTGAGATAGAGGATCTAAGGGCTAAGCTGGAAGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCAATTAAAGTCAAAGATGCTGAGTCAGAGGCTTATATATCTGAAATTGAGACCATTGGACAAGCATACGAAGATATGCAGACGCAGAACAAACATCTATTGCAGCAGGTGGCTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAGAGCGTAAAGACAAAACAGGCACATAGCATTTTACTTTCTCAGAAGCAGGCCTTAGCAAAGCAGCTTCAACAAATTAACGCTTCAATAGAAACTTTAAAGATGAGGATTACACACAGTGAAGATCAGATGAAAGCTCTTTTATCGGAAGCCATTAAATATACTCAAGAGGAAAAACACCTTGCAGTTACCCTGGAATCTGCAAAGTGGGAATTGGCTGATGCTGAAAGGGAGTTGAAGTGGCTTAAGTCTACTGTTACTTCTTCTGAGAAAGAGTATGATCAAATTCAGAAAGACTTAGAAGCTATGCAAATTGAGTTGGATATTGAAAGGAGTTCAAAACAGAAGCTTGAGGAAGAACTCAAGGACTTAAACAGCAAAATTGATGAGCTGAGTTCCGAAACAGGAGAGACAGCAATACAAAATCTACAAGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGCACCGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTCTGCAATCCTTGTATTCAAAGGAACTTAGAACTCCGTCATCGCAAGTGCCCTGCCTGTGGGACTGCTTTCGGTCAGAGTGATGTTCGGTTTGTGAAAATATGA 2676 0.4028 MESIESSRSVELMEDVESDEPEKKRGHLSSVCSPVARNSNNPSTNNKCADVGVLQFQNQQLVQQIDLQKQALHDLEVKIGDLKYRQNSYDNMIIAVNELWSQLVDDLILLGIRAGGGQNAFKNLEHPGNSRDSLSLCSVEDIFLSRLIQKGFIETNNHNEVINFVVEALAQRQSSTRELLKILDDTIDAQIERTYCITQGLEGSTSEDAIILMSKIDDIMKEEANNLREVIDALHVKHKDYAVANENYVSCQLQDQSEIKRIAGELDESMAELEESRRKLVNLKMQKDAAIGMQSPGSEAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVATDRLSELQEAQEDNLTLRGHLQDLQNELTDDKYVCSSRLYSLVNDQLQHWNTELERYKALTESLQAERVHVMKWEKELNSKLESADTARLAVDNSDCRIKELELQLQKCTIENNDIEIEMEEAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKNAAHEAVSLREKAHSLRSLLSGKTSEIKSLANKCSEQAVEIKSLKTLIEKLQKEKMELQFFLDLHGQENHEKRGLVEIRESESKALAQAEVLKDALDEHSLELRVKAANEAEAAYEQRLSAAEAEIEDLRAKLEASERDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNKHLLQQVAERDDYNIKLVSESVKTKQAHSILLSQKQALAKQLQQINASIETLKMRITHSEDQMKALLSEAIKYTQEEKHLAVTLESAKWELADAERELKWLKSTVTSSEKEYDQIQKDLEAMQIELDIERSSKQKLEEELKDLNSKIDELSSETGETAIQNLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1184 891 Coils Coil 423 457 - -
Lele04g1184 891 MobiDBLite consensus disorder prediction 294 313 - -
Lele04g1184 891 SMART ring_2 839 877 IPR001841 -
Lele04g1184 891 Coils Coil 58 78 - -
Lele04g1184 891 MobiDBLite consensus disorder prediction 7 27 - -
Lele04g1184 891 ProSiteProfiles Zinc finger RING-type profile. 839 877 IPR001841 -
Lele04g1184 891 Coils Coil 594 642 - -
Lele04g1184 891 ProSitePatterns Zinc finger RING-type signature. 854 863 IPR017907 -
Lele04g1184 891 Coils Coil 321 358 - -
Lele04g1184 891 Coils Coil 378 398 - -
Lele04g1184 891 Coils Coil 523 543 - -
Lele04g1184 891 PANTHER RING FINGER PROTEIN-RELATED 18 891 IPR013956 GO:0004842|GO:0010390
Lele04g1184 891 CDD RING-HC_BRE1_like 837 878 - -
Lele04g1184 891 Coils Coil 699 733 - -
Lele04g1184 891 Coils Coil 748 817 - -
Lele04g1184 891 MobiDBLite consensus disorder prediction 1 44 - -
Lele04g1184 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 820 890 IPR013083 -
Lele04g1184 891 Pfam Zinc finger, C3HC4 type (RING finger) 838 880 - -
Lele04g1184 891 Coils Coil 471 491 - -
Lele04g1184 891 SUPERFAMILY RING/U-box 838 882 - -
Lele04g1184 891 Coils Coil 259 286 - -
Lele04g1184 891 Gene3D - 695 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1184 Lele-ChrLele04 13513968 13545475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1184 799 886 RAD5 or RAD16-like Gene Family AT5G05130 25.773 3.33e-08 55.5