Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1161 ATGGGCAACTCGGATGGATTGAGTCTGAGCAACGAACAGAGCCGAGGCAAGAAGCTCCTTCAAGCGATGGAGATGCAAGAGCTTCTGAGCATGGGGTTTCCCGATGAGTTAGCGGCCCAAGCCCTAGCTGCTACTGGCGGCAAATCCACCATTAAAGCCACCGAATGGATCTTAAACCACAAAGCCACTTCTTCTAACTCAAACCCTTCTCCAGTTCAGCCCAAACTCGATCGCTATTTTCAGTTTCAATCCAAACCGGTTTCTACAGTCACAGCCTCATCACAAGCAATTCAACCAGAAGAACAAGAAGACGCCGATTTAGATTTAGAAGAATCAACCCCAAACGTTAATCCGTCATCCAAACGTCTGAAACTTTCACCATCTAACACCAAACCCACTTCTCCTGTCTTTCTGAATCATTTTCGTGGTCGCAAGAGTGCTGATAATGCTTCTAATGCCAAACCCCATGAGCCCTTATATGAGCGAATGCGTCCCAGAATCATTGATGATGTTATTGGTCAGGACCATTTGGTTGCTTCTAACTCCCTCCTTCGCTCCGCAATTGAACATGGCCGTCTCCCTTCCATCATCTTCTGGGGTCCTCCTGGTACAGGTAAGACGTCTATTGCTAAAGCCATTGTTAATTCAGCAAGTTCTTCTCAGAAACAACAAATCCCCTCTTATCGCTTTGTTTCGTTACCTGCTGTGACTAGTGGTGTTAAAGATGTGAGGGATGCGGTTGATGAGGCTAGGAAATTGAGAGTTAAGTGTAATCAAAGAACTGTTCTTTTTGTGGATGAGATTCACAGGTTTAACAAGTCTCAACAGGACTCTTTTTTGCCGGTTATTGAAGATGGAAGTATTGTCTTCGTTGGGGCCACTACTGAAAACCCTTCTTTCCATTTGATTACGCCATTGCTGTCTCGTTGTCGTGTTCTTACCCTAAACCCCTTGAAACCCCACCATGTTGAGATGATTCTAAAGAGGGCTGTGAATAATCTGGACAAAGGCTTGGTGCAAAGCATTGGTTTTCAAGTTGATGTTGCTGAAGATGTAATTAGTTTGATAGCCAACAATTGTGATGGTGATGCTCGGGTGGCATTGAATTCATTGGAGATTGCAGTTGTTACAGCAGCTGCTCGGTCACAAGATGATAAGAAATCCAAGGATGTCAAAGAAATAGAAGGCATGGATGGTCAGATAAACCAAGAAAATAGAGCTGGTCCGTCTCTTAATATTGTTACCCGGGATGATGCAAAAGAGGCGCTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTAATTAGCGCGCTGCACAAATCAATGAGGGGAAGTGATGCTGATGCGGCAATTTATTGGCTGGCAAGAATGTTGGAAGGAGGTGAAGAGCCTCTATATATTGCACGGAGATTGATAAGGTTTGCGAGTGAAGACATTGGGTTGGCTGATCCATCTGCTCTGAATCAGGCTGTTTGTTGTTACCAAGCCTGCCACTTCATGGGCATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGTAGCTTATTTGGCCTTAGCTCCTAAGTCGATTGCTGTATATCGAGCAATACAAGCTGCTCAGAAGGTTGTCAAGGAATCAGCTGGACAGAATGAGGGAGTGCCTCTTCATCTAAGAAATGCTCCAACTAAACTAATGAAGGAACTTGGCTACGGGAAGGGATACATATACACTCCTGATAATCCCACTTTGACCCAGAACTATTTACCACCTTCACTAAATGGGTACAAGTTCCTTGATTGGCCTGACAGGAATACCTCTGACAGACAAAAATGTTAA 1833 0.4457 MGNSDGLSLSNEQSRGKKLLQAMEMQELLSMGFPDELAAQALAATGGKSTIKATEWILNHKATSSNSNPSPVQPKLDRYFQFQSKPVSTVTASSQAIQPEEQEDADLDLEESTPNVNPSSKRLKLSPSNTKPTSPVFLNHFRGRKSADNASNAKPHEPLYERMRPRIIDDVIGQDHLVASNSLLRSAIEHGRLPSIIFWGPPGTGKTSIAKAIVNSASSSQKQQIPSYRFVSLPAVTSGVKDVRDAVDEARKLRVKCNQRTVLFVDEIHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVEMILKRAVNNLDKGLVQSIGFQVDVAEDVISLIANNCDGDARVALNSLEIAVVTAAARSQDDKKSKDVKEIEGMDGQINQENRAGPSLNIVTRDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDIGLADPSALNQAVCCYQACHFMGMPECNVILAQCVAYLALAPKSIAVYRAIQAAQKVVKESAGQNEGVPLHLRNAPTKLMKELGYGKGYIYTPDNPTLTQNYLPPSLNGYKFLDWPDRNTSDRQKC 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1161 610 FunFam Replication-associated recombination protein A 149 317 - -
Lele04g1161 610 Pfam ATPase family associated with various cellular activities (AAA) 196 312 IPR003959 GO:0005524|GO:0016887
Lele04g1161 610 Gene3D - 20 73 - -
Lele04g1161 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 403 IPR027417 -
Lele04g1161 610 Pfam UBA/TS-N domain 26 57 IPR015940 -
Lele04g1161 610 Gene3D - 318 393 - -
Lele04g1161 610 MobiDBLite consensus disorder prediction 112 136 - -
Lele04g1161 610 Pfam MgsA AAA+ ATPase C terminal 450 602 IPR021886 -
Lele04g1161 610 SMART AAA_5 192 318 IPR003593 -
Lele04g1161 610 MobiDBLite consensus disorder prediction 90 138 - -
Lele04g1161 610 SUPERFAMILY UBA-like 25 65 IPR009060 GO:0005515
Lele04g1161 610 SMART uba_6 21 59 IPR015940 -
Lele04g1161 610 Pfam AAA C-terminal domain 345 449 IPR032423 -
Lele04g1161 610 Gene3D - 528 609 - -
Lele04g1161 610 CDD AAA 172 311 - -
Lele04g1161 610 FunFam Putative AAA family ATPase 424 527 - -
Lele04g1161 610 FunFam AAA-type ATPase family protein 318 393 - -
Lele04g1161 610 SUPERFAMILY post-AAA+ oligomerization domain-like 434 604 IPR008921 GO:0003677|GO:0006260
Lele04g1161 610 CDD HLD_clamp_RarA 318 382 - -
Lele04g1161 610 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 18 60 IPR015940 -
Lele04g1161 610 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 23 608 - -
Lele04g1161 610 Gene3D - 146 316 IPR027417 -
Lele04g1161 610 Gene3D - 424 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1161 Lele-ChrLele04 9452226 9454367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1161 156 372 Core DNA Replication Machinery Family AT1G63160 26.126 7.35e-10 58.9