Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1146 ATGGGATCCCGAAAGTGTGACAATCCTCACTACGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGGCTAGCTAGAGATACAACACTCGAACAATTCGTCAAGTATTTTGAGAAGTATGGGGAGATAACAGACTCGGTGATAATGAAAGATCGGCATACGGGTCGACCTAGGGGTTTTGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCACGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTGGAGATCAAAAGGACAATACCAAAGGGCTTATCACAGGCTAATGATTTTAAAACTAAGAAGATATTTGTTGGTGGTATTCCAACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGAAAGGTTGTGGAGCATGAGATCATTCGTGATCATACAACTAAACGCTCTCGAGGATTTGGATTTGTAGTGTTTGACAGTGAAAAAGTTGTTGATAATTTGCTGGCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCAACATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCGGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTACGGTGGGTATGGTGGTGATGAGTTTGGTGATAGTTTTGGAAGCTATGGTGGTGGTGGTGGTTTTTCTGGCTATCGAGGTGATTCATCATTTGGCTATTCTAGTCGCTATGGTTCCTATATGGGGGGCCTTGGTGGTGGGTATGGTGGAAGTGGACTAGGGGCATACGGACGAGGTGCTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACACTGGCCCTGGTGCTGGCTATGGTGGACCAGGGGCACTGTATGGTAGTAGAGGAGGTTATGGAGGCAGTAGTCGTTACCACCCTTATGCAAGATAG 1044 0.4636 MGSRKCDNPHYGDGASPGKIFIGGLARDTTLEQFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQENHVINGKQVEIKRTIPKGLSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDSEKVVDNLLANGNMIDMAGTQVEIKKAEPKKASNPTSFPPFGSDRARPYSDGYGGFGESYSGFGSGSFGPASYRSLGGFGSRLGDYGGYGGDEFGDSFGSYGGGGGFSGYRGDSSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGAGGFASYGGPGSGGGYDTGPGAGYGGPGALYGSRGGYGGSSRYHPYAR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1146 347 SMART rrm1_1 19 90 IPR000504 GO:0003723
Lele04g1146 347 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lele04g1146 347 SUPERFAMILY RNA-binding domain, RBD 16 96 IPR035979 GO:0003676
Lele04g1146 347 Gene3D - 18 97 IPR012677 -
Lele04g1146 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Lele04g1146 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lele04g1146 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Lele04g1146 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Lele04g1146 347 SUPERFAMILY RNA-binding domain, RBD 98 213 IPR035979 GO:0003676
Lele04g1146 347 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 13 347 - -
Lele04g1146 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Lele04g1146 347 Gene3D - 98 224 IPR012677 -
Lele04g1146 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1146 Lele-ChrLele04 8065075 8067216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1146 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 26.455 2.80e-13 68.9