Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1143 ATGTCGAATCCTAAGCATCAGCGTGAGTCCCTGACAGCCAGTGCTGTCGATTCGTCCCTTTGGTATCACACAGCGAATGCTGCGGAATCGGATGGAAGGTCCTCAATCAGAACCACGAAGTCTTACCCACCGGCGAGCGCTCTCTATGAGGACCTCGCCAGCTGTTCGGACCTTTTCTGGAGAAAACTTCAGGACTTTCACAAATACTTGGGCACCAAATTGAAAGTTCCTACTATAGGAGGAAAGCCACTAGATCTATATCGCCTTTTTATTGAAGTCTCTTCTCGTGGTGGACTTGAAAAGGTTATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCGGAAACCGTAACCAGTGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTTCGGAAGCAAGTCCCTTCTTTTTCATGGCCTGATTCTGGTAGCAGGAGCATATTGACCTCAAAGGAAGGGGCTGCTTTGAATGATTTACCAGTTAGTACACTCGAGCAGAAGCTTGGCTCTTTGGTGCATGGTACCATCGATTTGAAATTTGATGGTGGATATGTGGTCACGGTGAATCTGGGTTCTGACCAGTTAAAAGGTGTGCTGTATCATGTTCCTCTCAATGCATCCCAGAGTTCTGCATCCATACCGGTTTCTCTGAATCGAAAGAGATCAAGGTTGGGTTCGTATGATCCATCACGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAACACTATGCCAGGCTGAAGCCTTCTTACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTCTATGGAACCATCTCACTGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGAAGGAGAGATAAGGAGAGATACAGGACTGAGATGGAGGAATACAAAGCGTCCAATAATGTGACTCAGTAG 966 0.4482 MSNPKHQRESLTASAVDSSLWYHTANAAESDGRSSIRTTKSYPPASALYEDLASCSDLFWRKLQDFHKYLGTKLKVPTIGGKPLDLYRLFIEVSSRGGLEKVIGDRKWKEVITVFKFPETVTSASFALRKYYQSLLYDFEQVYYFRKQVPSFSWPDSGSRSILTSKEGAALNDLPVSTLEQKLGSLVHGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNASQSSASIPVSLNRKRSRLGSYDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWNHLTEAERQVYQEKGRRDKERYRTEMEEYKASNNVTQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1143 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Lele04g1143 321 Gene3D - 41 152 IPR036431 GO:0003677
Lele04g1143 321 SMART bright_3 54 145 IPR001606 GO:0003677
Lele04g1143 321 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Lele04g1143 321 CDD HMGB-UBF_HMG-box 247 311 - -
Lele04g1143 321 SMART ARID_2 50 140 - -
Lele04g1143 321 Gene3D High mobility group box domain 232 321 IPR036910 -
Lele04g1143 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 29 317 - -
Lele04g1143 321 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Lele04g1143 321 SUPERFAMILY HMG-box 244 316 IPR036910 -
Lele04g1143 321 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Lele04g1143 321 SUPERFAMILY ARID-like 57 153 IPR036431 GO:0003677
Lele04g1143 321 SMART hmgende2 246 315 IPR009071 -
Lele04g1143 321 CDD ARID_HMGB9-like 56 140 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1143 Lele-ChrLele04 7728804 7736262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1143 47 317 ARID Transcription Factor Family AT3G13350 52.817 5.66e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele04g1143 ARID 4.8e-20 CL0123