Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1120 ATGGTTCTGTCCAAGACAGCTTCTCAGACGGACGTTTCCGTCCACTCGACGTTCGCCTCGCGCTACGTGAGAGCGCCGCTTCCCAGGTTCAAGATGGCCGAGCATTCCATCCCAAAGGAGGCGGCGTTCCAAATCATCAACGACGAGCTCATGCTCGACGGTAATCCCAGGCTCAACCTCGCCTCCTTTGTCACCACCTGGATGGAGCCCGAGTGCGACAAGCTCATCATGTCCTCCATCAACAAGAATTACGTCGACATGGACGAGTATCCCGTCACCACCGAGCTCCAGAATCGGTGTGTGAACATGATAGCCCATCTTTTCAATGCGCCTCTTCAAGATTCAGAGCCCGCCGTCGGTGTCGGAACGGTTGGCTCATCGGAGGCCATCATGTTGGCTGGCTTGGCTTTCAAAAGAAAGTGGCAGAACAGAAGAAGAGCAGAGGGCAAGCCTATCGACAACCCCAATATTGTCACTGGTGCTAATGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTTGAGGTGGAGCTCAAAGAGGTGAAGCTGAGGGAAGATTACTTCGTCATGGATCCTGAAAAGGCAGCGGAAATGGTGGATGAAAACACCATCTGTGTTGCTGCGATCCTCGGTTCCACCCTCAATGGAGAATTCGAAGATGTCAAACGCTTAAATGATCTCCTGATTGAGAAGAACAATGAAACTGGATGGGATACTCCAATTCATGTGGATGCAGCGAGTGGTGGATTCATCGCACCATTTATATATCCAGACCTTGAATGGGACTTTCGCTTGCCACTTGTGAAGAGCATCAACGTTAGTGGACACAAGTATGGTCTTGTGTATGCTGGCATTGGTTGGGTCATCTGGAGAAGTAAGGAAGATTTGCCTGAAGAACTCATCTTCCACATTAACTACCTCGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAGCTTATCCGCTTAGGCTATGAGGGTTATAGGAATGTGATGGAGAATTGCAGAGACAACATGATAGTGCTGAAAGAGGGGTTGGAGAAAACAGGGCGCTTTAGCATCGTATCAAAAGACGAAGGAGTGCCATTGGTGGCCTTCACCTTGAAGGATCACAGCCACTTCAATGAATTCCAGGTCTCTGATTTCTTGAAGCGCTATGGCTGGATCGTGCCGGCCTACACTATGCCTCCAGATGCCCAGAGCGTCACCGTCCTCCGTGTCGTCATCAGAGAGGACTTCTCCCGAACATTTGCTGAGCGTCTCGTCATTGATATCCAGAAAGTCTTGCACGAGCTCGATTTGCTTCCCGGCCGGCCCATCAAGAGCACGACCGTCAGCGTCACTGCAGAGATGGCAGAAAACGGCAATCTCGTCCCCAAGAAGAGCGAACTGGAGACCCAAAGGGAAATCACTACGGCCTGGAGGAAGTTCGTGTCCGACAGGAAGAAGATGAACGAGAAGATGAATGGTGTTTGTTAA 1515 0.5056 MVLSKTASQTDVSVHSTFASRYVRAPLPRFKMAEHSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQDSEPAVGVGTVGSSEAIMLAGLAFKRKWQNRRRAEGKPIDNPNIVTGANVQVCWEKFARYFEVELKEVKLREDYFVMDPEKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNNETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMIVLKEGLEKTGRFSIVSKDEGVPLVAFTLKDHSHFNEFQVSDFLKRYGWIVPAYTMPPDAQSVTVLRVVIREDFSRTFAERLVIDIQKVLHELDLLPGRPIKSTTVSVTAEMAENGNLVPKKSELETQREITTAWRKFVSDRKKMNEKMNGVC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1120 504 Gene3D - 361 448 - -
Lele04g1120 504 FunFam Glutamate decarboxylase 361 448 - -
Lele04g1120 504 CDD DOPA_deC_like 59 439 - -
Lele04g1120 504 FunFam Glutamate decarboxylase 66 360 - -
Lele04g1120 504 PANTHER GLUTAMATE DECARBOXYLASE 1 495 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lele04g1120 504 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lele04g1120 504 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lele04g1120 504 Gene3D - 1 65 - -
Lele04g1120 504 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Lele04g1120 504 Gene3D - 66 360 IPR015421 GO:0003824
Lele04g1120 504 FunFam Glutamate decarboxylase 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1120 Lele-ChrLele04 7065985 7067950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1120 1 504 Calmodulin-binding Proteins AT5G17330 82.213 0.0 875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1328 25 9083100 9083915 Lele04g1120 04 7065985 7067950 CCT
Lele01g1102 01 6471015 6472569 Lele04g1120 04 7065985 7067950 hybridization
Lele02g1135 02 7271917 7282026 Lele04g1120 04 7065985 7067950 hybridization