Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1116 ATGTTAGGTCGCCACGTGTCGAGGCTGTCTTTCGACGACAGCCACAAGATTTTAACGAGCCGTCGAGATTTCGATCGGGGGCACGCTCACAAGGATAATGAAGTTTCTAGATATAATGGTCTTCCACTAGAAACTGCCGTATCTCTGAGTTCTGGACTACGTTCTGCTTCACCTGTTCAACTAAACGATCAGATTTCTACTGGGAAAGAGCGTGCTCCAAAGGTAAGGAAACCATACACCATCACGAAGCAGAGGGAGCGATGGACTGATGAAGAACATAAGAAATTCATCGAAGCTCTGAAACTCCATGGCAGGGCATGGCGAAAGATTGAAGAACATATTGGCACAAAGACTGCAGTTCAGATTCGAAGCCATGCTCAGAAGTATTTCACAAAGGTTCTTCGTGAGTCTACTGGGATCTGCATAAGCTCAGAGGATTCCGTTGAAATCCCACCTCCTCGACCAAAGCGAAAGCCTTCTCATCCTTATCCTCGTAAGCTGGTCGAGTTCCCTGAGAAAGAAATCTCCAACACAGGTCAGTTATTGAGGTCTAATTCTCTCAAGTCATCAGAATCTGATCAAGAAAACCAGTCTCCAAAATCAGTGTTATCTACTGTTGGTTTAGACACCCTCCTATCCCCTGATTCATATATACCAAATGGAAGTCCTTTTGAGAAAGATGGTTCTGCCCCGAATGCTGATTCATCTCCTGATCTGCAAACTCCTCTGAAATTTGAGCTTCCCCCTAAAGAGAGTGTTTCTACCAAAGAAGACCCTTGTGGTCGTGTTGTTAAGCTTTTTGGGACGAATCTTCTGGCAAAAAATAGCTGTCCAACAAAGAAGAATTCTTCAGATGTTGCAGAAACTCCTACTGGTTTTGCTCCTTGGAGGGCTCTTTCCCACAATAGGGAAGTTGAAGATAATAATAAAGTTGAAAACGAAGTATCTTGGTGTGGTTCAAACATTACAAGCTCAATAAATGAAGGGGACAATAATAATGATGAAAACCCAGATGTTGAAGCCAGATCAAGTCATATGCATTGCTACAGAAAGGCTTCAGAAAAAATGAATCTTTTTGGTTACTACATGACAACACCCACAAACCCATCAACCATATCTGAATTATTGGAGAGGCCTAAAGGGTTTGTGCCATATAAGAAATTCATAGCACAGAGAGAAAATCAGCCCTTGCCTGTATTCGAAACTGGAAAGGGAATCTGGTTAAGCAAGGGAGCAGAAGACCGGGAAGCTGCTGTGAAGAGCTTGATTGAAGTAGTGAAGAACTTGGAGGAGGGGGCTCTTGGTGACAGATTACTTTGGGGGTAA 1326 0.4336 MLGRHVSRLSFDDSHKILTSRRDFDRGHAHKDNEVSRYNGLPLETAVSLSSGLRSASPVQLNDQISTGKERAPKVRKPYTITKQRERWTDEEHKKFIEALKLHGRAWRKIEEHIGTKTAVQIRSHAQKYFTKVLRESTGICISSEDSVEIPPPRPKRKPSHPYPRKLVEFPEKEISNTGQLLRSNSLKSSESDQENQSPKSVLSTVGLDTLLSPDSYIPNGSPFEKDGSAPNADSSPDLQTPLKFELPPKESVSTKEDPCGRVVKLFGTNLLAKNSCPTKKNSSDVAETPTGFAPWRALSHNREVEDNNKVENEVSWCGSNITSSINEGDNNNDENPDVEARSSHMHCYRKASEKMNLFGYYMTTPTNPSTISELLERPKGFVPYKKFIAQRENQPLPVFETGKGIWLSKGAEDREAAVKSLIEVVKNLEEGALGDRLLWG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1116 441 MobiDBLite consensus disorder prediction 150 172 - -
Lele04g1116 441 FunFam protein REVEILLE 6 isoform X1 87 135 - -
Lele04g1116 441 CDD SANT 87 130 IPR001005 -
Lele04g1116 441 PANTHER SWI/SNF COMPLEX-RELATED 70 355 - -
Lele04g1116 441 MobiDBLite consensus disorder prediction 177 202 - -
Lele04g1116 441 MobiDBLite consensus disorder prediction 145 202 - -
Lele04g1116 441 SMART sant 84 132 IPR001005 -
Lele04g1116 441 MobiDBLite consensus disorder prediction 214 257 - -
Lele04g1116 441 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Lele04g1116 441 SUPERFAMILY Homeodomain-like 79 132 IPR009057 -
Lele04g1116 441 ProSiteProfiles SANT domain profile. 83 134 IPR017884 -
Lele04g1116 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Lele04g1116 441 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Lele04g1116 441 Gene3D - 87 133 - -
Lele04g1116 441 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 132 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1116 Lele-ChrLele04 7036149 7040812 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele04g1116 Myb_DNA-binding 9.9e-15 CL0123