Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1113 ATGTTGACTTCTTTCTTATGTTGTTGTTGTTCATGTTCCCTTGGTCTGCCATTCTCTCTTCTTCCATATGAAACTACAATTATGACAATGGGTGACGCCGAGTCCTTAGCAGCAGCATTCCCATTTGATAGAGCTGTCGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTCAAATGTGGACGTAGAGGAAAGCCCAAGCTCTGCCCTTTTAGACTTTCTCTAGATGAGAAAACTTTGATTTGGTTTTCTGGGCAAAAGGAAAAGCATTTGCAACTGAGTGAAGTTACAAGAATTATTCAAGAGCAGGGAAATATGAAGTCCCAGAGACCAAGCCAACCTGAAAAAGATTGCCATTCATTTTCACTAATCTATGCAAGTGGTGAGCGCTCACTCGATTTGATATGCAAAGACAAAGCACAGGCTACTTCTTGGTTAGTGGGATTGAGAGCTCTGATATCCAGGCCCCAGCATCCAAGACCGTTAAGTAGTTTAAGGACCCGTAAAGGAGTGCAGAGTTGTGTAAATAGTCCTGCTGGGATCTTTCGCAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGTTGAATTTGCTCAGGTACACAGCTTACATGCGAGTCCTAATTTCTCACTTTCAGAAAGGTGCTTTTCTGAGGGCTTATCAGATGCATCTGATAGTATTTATTCTTTAGAGTCTTTCCCATACAATTCTCAGAATTCTCGGAGCATAATGGATATTAAAGTCCTGGGTTCTGCACATGTTGATCCAGATTTTCGCAATAAAAATGGTTCAATATATTCTGACACAGAGTATGAGAAGAATTCGTCCTATTGGCATCTGCCTCCTCCAACCTCTCTTCATGTAGGAAACAACAATGTATTGAAGGATGTCATGGTATGGGGTGAAGAAATTGTACGAGGTGGTAATAAACATAATGATCATAGTACGTTGCCAAAGTTACTAGAATCCACTTTGATGCTAGATGTACAGAATATAGCTTTAGGAGGAAAGCATGCTGTCTTAGTCACAAAACAAGGTGAAGTTTTCTGTTGGGGACAAGGGAAAGGCGGAAGGCTGGGGCACAAAATTGACATCGATGTTAGTTCTCCGAAAATCGTTGATTCTCTAAATGGAATCCATGTAAAATCTGTTGTCTGTGGCGAGTATCATACATGTGCTCTGACAGACACCGGTGTTGTGTATACATGGGGAAATGATGGTGGTTGTACAGATTCTGTAGGTTATGGGAAAGGTAGAAGTCAGTGGATACCGCATAAACTTTTGATACCTTTAGATGGTATTAGTATCTCTAGTATTGCTTGTGGGGAATGGCATACTGCAGTTGTCTCTTGTTGTGGAAGACTATTTACATATGGTGATGGTACTTTTGGAGTTCTAGGGCATGGAAATCTTCTGAGCATTTCTCAACCGAAAGAAGTTGAGTCTCTTAAAGGTAAGCGAGTGAGGTCTGTTGCTTGTGGATCATGGCACACGGCAGCTATTGTAGAAATTGTGACTCCCCATTGTAGGTACAGTAGTTCTTGTAAGCTGTTTACCTGGGGCGACGGAGATGGGGGGCGGCTTGGTCATGCTGATAATGGAAGGAAGCTTTTTCCAACATGTGTTACACAACTTGTAGATTATGATTTTGTTGAAGTATCTTGTGGAATAATGTTGACCGTTGCGCTTACTAATTTGGGTAAAGTTTTCACCATGGGAAGTAAGGTTCATGGACAGCTAGGAAACTCTTATGCCAAGGATAAGACAGTGAATCTTGTCGAAGGACACTTGAAACGGGACTTTGTTAAGCAGATATCGTGTGGTTCGTATCACGTGGCTGCGTTGACATCTTCAGGCAGTGTCTATACATGGGGCAAGGGAACAAATGGACAGTTAGGGTTGGGTGATACTAAAGACAGATACTCGCCTTCTTTCGTCGAGGCGCTAAAAGATTGGCAGATAGAGAGTATTGCTTGTGGTTCAAGCTTCACAGCTGCAATTTGTTTACACAAACCTGTTTCTATTGTTGACCAGTCAACTTGTACCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAGACATAACTGCTATAACTGTGGCCTTCTCTTTTGCAATTCATGTAGCTCTAACAAAGTTACAAATGCATCTCTAGCCCCGATTAGGAACAAGGCTTTTCGGGTTTGTGATCTTTGCTTTCGTAAATGCCAAGGAATTACTCACTACTCACCTAAGGGATCAAAGTTGCAAAATCATAACACTATGCAGCAATCAAAGCGCTGGAATAAATTTCCTTATCTGACAGAAGATGAAGGGGAAACAGCAGTATCATCAGGTCCTCTGTCGTCTTTCAGTCAATCGTGCTACATGAAAAGCATGCCTAGCGGAAGGAAGGACTGGAAAAATCAACTAGAAAGCCACAAACATGTAGAAAACTTCTCTTCAGTGTTGTTGGGTGGGGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATAGATTTAAAACGAATTGTACAGAAAATTCTTTCATGCACGTTTCTTTGTTGAAAAATAAATTAGCTTCTTCTAATCCATTGAGACTAGAATCTACAGTATCCAGGATCCATAACGCAGAGAAAGATACGCCAAAGTCTGAGAAAGTAATTCTAGAAGAAGTTCAGAGGCTGAGAGCTACGGCTGGGAAGCTTGAAGAGCAGTGTAAGCTCCAAAACTGTATGTTACAAGAATGTCAGCAAAAGATTGAGAAGAGCGTGTCGCTGGCGAGGGAGGAAGCTGCTAAATGTAGAGCTGCAAAAGAGGTCATAAAAGTTCTGACGTCAAAACTTCAAACAATATCAGAAAAAGACGATGCTGTACAAGAAGGAAAGGTCGGGGTGAACAAATGCGGGCCTTATCTTTCTTCCGTGATCACGGATGTGGATACTCCGAAAGATTGCAACTTGGACATTCAATCTGATTCTTCTCCTATAGTGTTCTCTGACAAATTAAGATCCAAAGTTGGGAGAAGCAAATTCCTCCAAAGTGGTAAATCGAGTGAGGATTCTCAGGTCACCGGAGTTCAATCTCAGCAAGATGGTGTTAACAAAGGATCAAATAATGAATGGATAGAACAGTACAAACCCGGCGTGTACATCACTCTTACTTCCTTACCATGTGGACAAATTAGCCTTAAAAGAGTCAGATTCAGCCGGAAACGATTCTCTGAGAATGAAGCAGAGCAGTGGTGGGAAGAGAATCAAGCAAGAGTGTGCCGCGATTATGGGGTGGAAGGATACAGTAACAGCAGCCAAACTCAAGTGTAA 3306 0.4189 MLTSFLCCCCSCSLGLPFSLLPYETTIMTMGDAESLAAAFPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSLDEKTLIWFSGQKEKHLQLSEVTRIIQEQGNMKSQRPSQPEKDCHSFSLIYASGERSLDLICKDKAQATSWLVGLRALISRPQHPRPLSSLRTRKGVQSCVNSPAGIFRRKKNLGLLEDTVEFAQVHSLHASPNFSLSERCFSEGLSDASDSIYSLESFPYNSQNSRSIMDIKVLGSAHVDPDFRNKNGSIYSDTEYEKNSSYWHLPPPTSLHVGNNNVLKDVMVWGEEIVRGGNKHNDHSTLPKLLESTLMLDVQNIALGGKHAVLVTKQGEVFCWGQGKGGRLGHKIDIDVSSPKIVDSLNGIHVKSVVCGEYHTCALTDTGVVYTWGNDGGCTDSVGYGKGRSQWIPHKLLIPLDGISISSIACGEWHTAVVSCCGRLFTYGDGTFGVLGHGNLLSISQPKEVESLKGKRVRSVACGSWHTAAIVEIVTPHCRYSSSCKLFTWGDGDGGRLGHADNGRKLFPTCVTQLVDYDFVEVSCGIMLTVALTNLGKVFTMGSKVHGQLGNSYAKDKTVNLVEGHLKRDFVKQISCGSYHVAALTSSGSVYTWGKGTNGQLGLGDTKDRYSPSFVEALKDWQIESIACGSSFTAAICLHKPVSIVDQSTCTSCELPFGFRRKRHNCYNCGLLFCNSCSSNKVTNASLAPIRNKAFRVCDLCFRKCQGITHYSPKGSKLQNHNTMQQSKRWNKFPYLTEDEGETAVSSGPLSSFSQSCYMKSMPSGRKDWKNQLESHKHVENFSSVLLGGVPQWGKVSCPDRFKTNCTENSFMHVSLLKNKLASSNPLRLESTVSRIHNAEKDTPKSEKVILEEVQRLRATAGKLEEQCKLQNCMLQECQQKIEKSVSLAREEAAKCRAAKEVIKVLTSKLQTISEKDDAVQEGKVGVNKCGPYLSSVITDVDTPKDCNLDIQSDSSPIVFSDKLRSKVGRSKFLQSGKSSEDSQVTGVQSQQDGVNKGSNNEWIEQYKPGVYITLTSLPCGQISLKRVRFSRKRFSENEAEQWWEENQARVCRDYGVEGYSNSSQTQV 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1113 1101 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 677 739 IPR017455 -
Lele04g1113 1101 SMART fyve_4 671 740 IPR000306 GO:0046872
Lele04g1113 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Lele04g1113 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 558 576 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 331 344 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 441 457 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 457 471 IPR000408 -
Lele04g1113 1101 PRINTS Chromosome condensation regulator RCC1 signature 616 637 IPR000408 -
Lele04g1113 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Lele04g1113 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Lele04g1113 1101 SUPERFAMILY RCC1/BLIP-II 298 673 IPR009091 -
Lele04g1113 1101 SUPERFAMILY PH domain-like 45 155 - -
Lele04g1113 1101 CDD PH_PLC_plant-like 44 156 - -
Lele04g1113 1101 Gene3D - 285 507 IPR009091 -
Lele04g1113 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 746 IPR013083 -
Lele04g1113 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 620 669 IPR000408 -
Lele04g1113 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 519 565 IPR000408 -
Lele04g1113 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 348 396 IPR000408 -
Lele04g1113 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 455 503 IPR000408 -
Lele04g1113 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 400 451 IPR000408 -
Lele04g1113 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 569 617 IPR000408 -
Lele04g1113 1101 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Lele04g1113 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 400 454 IPR000408 -
Lele04g1113 1101 MobiDBLite consensus disorder prediction 1007 1034 - -
Lele04g1113 1101 Pfam Pleckstrin homology domain 47 155 IPR001849 -
Lele04g1113 1101 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 90 942 - -
Lele04g1113 1101 SUPERFAMILY FYVE/PHD zinc finger 679 744 IPR011011 -
Lele04g1113 1101 Gene3D - 45 161 IPR011993 -
Lele04g1113 1101 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1088 IPR013591 -
Lele04g1113 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 621 672 IPR000408 -
Lele04g1113 1101 Gene3D - 508 678 IPR009091 -
Lele04g1113 1101 Coils Coil 880 900 - -
Lele04g1113 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 399 IPR000408 -
Lele04g1113 1101 Pfam FYVE zinc finger 680 739 IPR000306 GO:0046872
Lele04g1113 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 493 503 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1113 Lele-ChrLele04 6992718 6999010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1113 1035 1094 Major Intrinsic Protein MIP AT1G31880 45.000 1.96e-11 65.1