Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1067 ATGGCAGCTGAAACACATAATGGTCTTGTGGCAATTTTGGCAAATGAAAAACGTAATGATATGAAGGAGGGCAGTGAAGAAATTCCTCCGTCTGATCCCATGTTTAAGAAGAAAAAGAGCATTTTGATGCAAGATCCTGATGGTGGTTGCTCCACTGAGGAGCTCCAACTGCAGAATCATGCAGCTAACTCTTCTAAGGTGTGTAAAACCAGGCAGAAACCCCGACAAAAGCTCGTCAGAATTATAGTAACTGACCCTGAAGCTACTGATATTGACTCTTGCACCAGCGAAGATGCGGAAAATCCTATAACATCACGAGGAGGGGAGAGGCAAGTAACACAGATCTGCATTGACATTCCCTCAGATTCTGCTTCCTCTTTCGTCTCCACTCCTTTTCCTACCAAGGAAGAGTTAACCCACATTGAGAAACTAAAGAAATCATCCAACAATGATGACTCAGCTGGGGGCCACAAGAAGTACAGGGGTGTTCGCCAGAGGAAATGGGGTCGTTGGGCTGCTGAAATCCGAGACCCAGTTAGTCGAAAAAGGCGCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCGTCGGAGTATGACAAGGCTGCCGTGAAGCTGAGGGGCCTTAATGCCATAACCAACTTCCCTCAGACTGTGACAAAGGAGGTGAAGCCTGCCACCATCCGTGACAGCTCAAGCACTGATAGTTTTACCTCGTTCGGTGCAGCACGGGCATCTCCAACCTCTGTGCTGTCTTAG 759 0.4809 MAAETHNGLVAILANEKRNDMKEGSEEIPPSDPMFKKKKSILMQDPDGGCSTEELQLQNHAANSSKVCKTRQKPRQKLVRIIVTDPEATDIDSCTSEDAENPITSRGGERQVTQICIDIPSDSASSFVSTPFPTKEELTHIEKLKKSSNNDDSAGGHKKYRGVRQRKWGRWAAEIRDPVSRKRRWLGTFDTAEEAASEYDKAAVKLRGLNAITNFPQTVTKEVKPATIRDSSSTDSFTSFGAARASPTSVLS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1067 252 MobiDBLite consensus disorder prediction 1 35 - -
Lele04g1067 252 Pfam AP2 domain 159 208 IPR001471 GO:0003700|GO:0006355
Lele04g1067 252 SMART rav1_2 159 222 IPR001471 GO:0003700|GO:0006355
Lele04g1067 252 MobiDBLite consensus disorder prediction 16 35 - -
Lele04g1067 252 ProSiteProfiles AP2/ERF domain profile. 159 216 IPR001471 GO:0003700|GO:0006355
Lele04g1067 252 MobiDBLite consensus disorder prediction 144 163 - -
Lele04g1067 252 Gene3D AP2/ERF domain 158 218 IPR036955 GO:0003700|GO:0006355
Lele04g1067 252 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 75 250 - -
Lele04g1067 252 FunFam Ethylene-responsive transcription factor 2 158 217 - -
Lele04g1067 252 MobiDBLite consensus disorder prediction 226 252 - -
Lele04g1067 252 CDD AP2 158 218 IPR001471 GO:0003700|GO:0006355
Lele04g1067 252 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Lele04g1067 252 PRINTS Ethylene responsive element binding protein signature 160 171 IPR001471 GO:0003700|GO:0006355
Lele04g1067 252 PRINTS Ethylene responsive element binding protein signature 182 198 IPR001471 GO:0003700|GO:0006355
Lele04g1067 252 MobiDBLite consensus disorder prediction 144 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1067 Lele-ChrLele04 6666489 6667466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1067 57 252 AP2-EREBP Transcription Factor Family AT4G27950 39.109 1.98e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele04g1067 AP2 8.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1067 04 6666489 6667466 Lele04g1067 04 6666489 6667466 ECH
Lele01g1054 01 6121799 6122596 Lele04g1067 04 6666489 6667466 hybridization
Lele02g1082 02 6807458 6808435 Lele04g1067 04 6666489 6667466 hybridization